miRNA display CGI


Results 81 - 100 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28837 3' -57.3 NC_006146.1 + 138810 0.67 0.849508
Target:  5'- -gGcCCGGGGuuggugagcuauUGGGCGcccGGACAGGGUu -3'
miRNA:   3'- ugCaGGCUCCu-----------ACCCGU---CCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 137031 0.66 0.880463
Target:  5'- ---cCCGGGGAgGaGGcCGGGugGGGGCc -3'
miRNA:   3'- ugcaGGCUCCUaC-CC-GUCCugUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 135961 0.68 0.810064
Target:  5'- cACGUcaccCCGGGGugcUGGGguGGGgGauGGGCu -3'
miRNA:   3'- -UGCA----GGCUCCu--ACCCguCCUgU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 128664 0.73 0.518969
Target:  5'- gACGg-CGGGGAcGGGCAGGAgAcaacGGGCg -3'
miRNA:   3'- -UGCagGCUCCUaCCCGUCCUgU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 127952 0.67 0.851062
Target:  5'- aGCGUgcCCGGGGcggaGGGCAgGGACcGGGa -3'
miRNA:   3'- -UGCA--GGCUCCua--CCCGU-CCUGuUCCg -5'
28837 3' -57.3 NC_006146.1 + 127836 0.71 0.61778
Target:  5'- aGCcUCCccugGAGGGUGGGCuuGGGCAGccGGCg -3'
miRNA:   3'- -UGcAGG----CUCCUACCCGu-CCUGUU--CCG- -5'
28837 3' -57.3 NC_006146.1 + 125619 0.68 0.783539
Target:  5'- ---aCCGAGGGUgGGGCAuGGGCu-GGUg -3'
miRNA:   3'- ugcaGGCUCCUA-CCCGU-CCUGuuCCG- -5'
28837 3' -57.3 NC_006146.1 + 123566 0.67 0.858714
Target:  5'- cACGUgCCGAGGAUGucuucCAGGACAAcaaGCu -3'
miRNA:   3'- -UGCA-GGCUCCUACcc---GUCCUGUUc--CG- -5'
28837 3' -57.3 NC_006146.1 + 122219 0.68 0.798729
Target:  5'- gGCGggCGAGGGaggccggcgaagcaUGGGcCAGGAUucagAAGGCg -3'
miRNA:   3'- -UGCagGCUCCU--------------ACCC-GUCCUG----UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 120506 0.67 0.86172
Target:  5'- gGCGgCCGAGGAcgcgagccgcguggaUGcggcGGCGGGACugcuGGCc -3'
miRNA:   3'- -UGCaGGCUCCU---------------AC----CCGUCCUGuu--CCG- -5'
28837 3' -57.3 NC_006146.1 + 118392 0.66 0.866169
Target:  5'- -gGUCUGcAGGAuaaacaUGGGCGGaGCAuGGCg -3'
miRNA:   3'- ugCAGGC-UCCU------ACCCGUCcUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 117807 0.66 0.865432
Target:  5'- cGCcUCCGGacuagacGGA-GGGgAGGAgGAGGCg -3'
miRNA:   3'- -UGcAGGCU-------CCUaCCCgUCCUgUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 116819 0.66 0.893906
Target:  5'- gGCGUCC-AGGAcgUGuGcCGGGACGcGGCg -3'
miRNA:   3'- -UGCAGGcUCCU--ACcC-GUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 116752 0.66 0.866168
Target:  5'- ----aCGAGGAggaGGGCAGGG--GGGCc -3'
miRNA:   3'- ugcagGCUCCUa--CCCGUCCUguUCCG- -5'
28837 3' -57.3 NC_006146.1 + 116045 0.66 0.87342
Target:  5'- cACGgcccgcugCUGGGGAUGGcGCAuGACAAauguGGCg -3'
miRNA:   3'- -UGCa-------GGCUCCUACC-CGUcCUGUU----CCG- -5'
28837 3' -57.3 NC_006146.1 + 112720 0.71 0.61778
Target:  5'- gGCGUCCcuGAGGcccGUGuacaGGCAGGugguCGAGGCg -3'
miRNA:   3'- -UGCAGG--CUCC---UAC----CCGUCCu---GUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 111344 0.69 0.755834
Target:  5'- gGCGcaacCCGAGG-UGGGCAu--CAGGGCg -3'
miRNA:   3'- -UGCa---GGCUCCuACCCGUccuGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 110874 0.7 0.686919
Target:  5'- uGCGUCUcGGGcucGGGCgcaggcgGGGACGGGGCc -3'
miRNA:   3'- -UGCAGGcUCCua-CCCG-------UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 109186 0.66 0.880463
Target:  5'- -aGUCUGAGGcccagacagaGGGCuGGACu-GGCg -3'
miRNA:   3'- ugCAGGCUCCua--------CCCGuCCUGuuCCG- -5'
28837 3' -57.3 NC_006146.1 + 103556 0.74 0.460862
Target:  5'- cCGgaccCCGAGGAUGGGCucgcccgggccuGGGCcGGGCu -3'
miRNA:   3'- uGCa---GGCUCCUACCCGu-----------CCUGuUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.