miRNA display CGI


Results 101 - 120 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28837 3' -57.3 NC_006146.1 + 103099 0.73 0.518969
Target:  5'- uACuUCCGAGGcgGGGCAGaGCcuGGCc -3'
miRNA:   3'- -UGcAGGCUCCuaCCCGUCcUGuuCCG- -5'
28837 3' -57.3 NC_006146.1 + 100710 0.7 0.65796
Target:  5'- gGCGcUgCGGGGGUGGGUguGGGACc-GGCc -3'
miRNA:   3'- -UGC-AgGCUCCUACCCG--UCCUGuuCCG- -5'
28837 3' -57.3 NC_006146.1 + 99993 0.66 0.872704
Target:  5'- cGCGUCCucGGGAUcGGGagcGGGCAcgucgggAGGCg -3'
miRNA:   3'- -UGCAGGc-UCCUA-CCCgu-CCUGU-------UCCG- -5'
28837 3' -57.3 NC_006146.1 + 99547 0.67 0.818605
Target:  5'- -aGUCCGAGcccccgGGGCAGaGAuCGGGGUc -3'
miRNA:   3'- ugCAGGCUCcua---CCCGUC-CU-GUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 98233 0.66 0.869094
Target:  5'- gGCGUagCCGGGGugcaGGGC-GGACAgcacguccaacagaaAGGCc -3'
miRNA:   3'- -UGCA--GGCUCCua--CCCGuCCUGU---------------UCCG- -5'
28837 3' -57.3 NC_006146.1 + 95583 0.68 0.782633
Target:  5'- gGCGUCCGAGGucAUGuucaGCAugaacguGGACGAGaGCg -3'
miRNA:   3'- -UGCAGGCUCC--UACc---CGU-------CCUGUUC-CG- -5'
28837 3' -57.3 NC_006146.1 + 94902 0.66 0.891946
Target:  5'- gGCGUCUGucuGGGUGGGCGaGcccacgcagacgauGCAGGGg -3'
miRNA:   3'- -UGCAGGCu--CCUACCCGUcC--------------UGUUCCg -5'
28837 3' -57.3 NC_006146.1 + 91186 0.69 0.736824
Target:  5'- ----aUGAGGGUGcGGCGGGGCAGGaGUg -3'
miRNA:   3'- ugcagGCUCCUAC-CCGUCCUGUUC-CG- -5'
28837 3' -57.3 NC_006146.1 + 89768 0.74 0.45723
Target:  5'- gGCGgaaaUCGAGGAcgagGGGCccauggccguggacgAGGACGAGGCa -3'
miRNA:   3'- -UGCa---GGCUCCUa---CCCG---------------UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 89677 0.67 0.858714
Target:  5'- cAUGUCCGAcGGAagGGGCccgGGGAac-GGCc -3'
miRNA:   3'- -UGCAGGCU-CCUa-CCCG---UCCUguuCCG- -5'
28837 3' -57.3 NC_006146.1 + 89016 0.66 0.887293
Target:  5'- cACGgagccugCCGuGGAuguUGGGUcugAGGcCGAGGCu -3'
miRNA:   3'- -UGCa------GGCuCCU---ACCCG---UCCuGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 86298 0.69 0.734903
Target:  5'- cUGUCCGgcauggcuggaguAGGAggcccUGGGCAGGGucuugauCAGGGCc -3'
miRNA:   3'- uGCAGGC-------------UCCU-----ACCCGUCCU-------GUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 85566 0.69 0.717462
Target:  5'- -gGUCgGGGGcacGUGGGguGGcAgGAGGCa -3'
miRNA:   3'- ugCAGgCUCC---UACCCguCC-UgUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 81667 0.68 0.774424
Target:  5'- -gGUgCCGGGGAaGcGGCGGGACAaauuGGGg -3'
miRNA:   3'- ugCA-GGCUCCUaC-CCGUCCUGU----UCCg -5'
28837 3' -57.3 NC_006146.1 + 77830 0.67 0.851061
Target:  5'- gACGgCgGAGGGggGGGCGGGG--GGGUg -3'
miRNA:   3'- -UGCaGgCUCCUa-CCCGUCCUguUCCG- -5'
28837 3' -57.3 NC_006146.1 + 76582 0.66 0.87342
Target:  5'- -gGUCCccguGGGGAccGaGCAGGACGAGGa -3'
miRNA:   3'- ugCAGG----CUCCUacC-CGUCCUGUUCCg -5'
28837 3' -57.3 NC_006146.1 + 72196 0.67 0.818605
Target:  5'- cGCGg-CGGccGGAUGGGCGGGAgacCAGcGGCc -3'
miRNA:   3'- -UGCagGCU--CCUACCCGUCCU---GUU-CCG- -5'
28837 3' -57.3 NC_006146.1 + 69609 0.75 0.384766
Target:  5'- cACGUaCCaGAaGAUGGGCAGGAUGAGGa -3'
miRNA:   3'- -UGCA-GG-CUcCUACCCGUCCUGUUCCg -5'
28837 3' -57.3 NC_006146.1 + 69519 0.66 0.880463
Target:  5'- uCGUCggccuguggUGAGGaAUGGG-GGGugGGGGCa -3'
miRNA:   3'- uGCAG---------GCUCC-UACCCgUCCugUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 68721 0.67 0.826983
Target:  5'- cGCGUCCccGAGaGcugucgcGGGguGGugGAGGCc -3'
miRNA:   3'- -UGCAGG--CUC-Cua-----CCCguCCugUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.