miRNA display CGI


Results 61 - 80 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28837 3' -57.3 NC_006146.1 + 170164 0.72 0.577764
Target:  5'- gGCGccggCCGGGGGcugaggGGGCucccgAGGGCGGGGCc -3'
miRNA:   3'- -UGCa---GGCUCCUa-----CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 15217 0.71 0.594722
Target:  5'- cGCGUCCGcAGGA-GGGUcuuccuugaagaagAGGAC-GGGCc -3'
miRNA:   3'- -UGCAGGC-UCCUaCCCG--------------UCCUGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 15917 0.71 0.617781
Target:  5'- gGCGgccggacCCGAGGA-GGcGCcuGGGCGAGGCu -3'
miRNA:   3'- -UGCa------GGCUCCUaCC-CGu-CCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 127952 0.67 0.851062
Target:  5'- aGCGUgcCCGGGGcggaGGGCAgGGACcGGGa -3'
miRNA:   3'- -UGCA--GGCUCCua--CCCGU-CCUGuUCCg -5'
28837 3' -57.3 NC_006146.1 + 155684 0.67 0.817758
Target:  5'- --uUCUGAGGAUggcccgguacugcGGGUucgAGGugAAGGCg -3'
miRNA:   3'- ugcAGGCUCCUA-------------CCCG---UCCugUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 54693 0.67 0.826983
Target:  5'- gGCGUaaaugagcUCGAGGGgacggcGGGCccGGGuCAGGGCg -3'
miRNA:   3'- -UGCA--------GGCUCCUa-----CCCG--UCCuGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 153611 0.68 0.774424
Target:  5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3'
miRNA:   3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 142325 0.68 0.783539
Target:  5'- gGCGcCCggagcGAGGccGGGCAGG-CcGGGCa -3'
miRNA:   3'- -UGCaGG-----CUCCuaCCCGUCCuGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 125619 0.68 0.783539
Target:  5'- ---aCCGAGGGUgGGGCAuGGGCu-GGUg -3'
miRNA:   3'- ugcaGGCUCCUA-CCCGU-CCUGuuCCG- -5'
28837 3' -57.3 NC_006146.1 + 156688 0.68 0.774424
Target:  5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3'
miRNA:   3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 154035 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 150533 0.68 0.774424
Target:  5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3'
miRNA:   3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 141479 0.66 0.887293
Target:  5'- gGCcUgCGGGGGacaGGguGGACGGGGCu -3'
miRNA:   3'- -UGcAgGCUCCUac-CCguCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 157113 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 40292 0.67 0.858714
Target:  5'- gGCGggCCaaaGAGGccGGGCAGGcCAaaguAGGCc -3'
miRNA:   3'- -UGCa-GG---CUCCuaCCCGUCCuGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 120506 0.67 0.86172
Target:  5'- gGCGgCCGAGGAcgcgagccgcguggaUGcggcGGCGGGACugcuGGCc -3'
miRNA:   3'- -UGCaGGCUCCU---------------AC----CCGUCCUGuu--CCG- -5'
28837 3' -57.3 NC_006146.1 + 144377 0.68 0.774424
Target:  5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3'
miRNA:   3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 141299 0.68 0.774424
Target:  5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3'
miRNA:   3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 89016 0.66 0.887293
Target:  5'- cACGgagccugCCGuGGAuguUGGGUcugAGGcCGAGGCu -3'
miRNA:   3'- -UGCa------GGCuCCU---ACCCG---UCCuGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 158554 0.66 0.880463
Target:  5'- cGCGgagggcCUGAGGcccagGGGCgagGGGACuGAGGCg -3'
miRNA:   3'- -UGCa-----GGCUCCua---CCCG---UCCUG-UUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.