miRNA display CGI


Results 101 - 120 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28837 3' -57.3 NC_006146.1 + 32131 0.68 0.810064
Target:  5'- cACGUcaccCCGGGGugcUGGGguGGGgGauGGGCu -3'
miRNA:   3'- -UGCA----GGCUCCu--ACCCguCCUgU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 135961 0.68 0.810064
Target:  5'- cACGUcaccCCGGGGugcUGGGguGGGgGauGGGCu -3'
miRNA:   3'- -UGCA----GGCUCCu--ACCCguCCUgU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 141209 0.67 0.818605
Target:  5'- gGC-UCCuGGGGGgaacUGGGCAguGGACAcgGGGCu -3'
miRNA:   3'- -UGcAGG-CUCCU----ACCCGU--CCUGU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 147365 0.67 0.818605
Target:  5'- gGC-UCCuGGGGGgaacUGGGCAguGGACAcgGGGCu -3'
miRNA:   3'- -UGcAGG-CUCCU----ACCCGU--CCUGU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 153521 0.67 0.818605
Target:  5'- gGC-UCCuGGGGGgaacUGGGCAguGGACAcgGGGCu -3'
miRNA:   3'- -UGcAGG-CUCCU----ACCCGU--CCUGU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 144377 0.68 0.774424
Target:  5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3'
miRNA:   3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 161764 0.72 0.587728
Target:  5'- -gGUCCGAGG--GGGCGccuGGGCGGGGg -3'
miRNA:   3'- ugCAGGCUCCuaCCCGU---CCUGUUCCg -5'
28837 3' -57.3 NC_006146.1 + 32006 0.71 0.597723
Target:  5'- cACG-CUagGAGGAcagagGGGCcucGGGACGAGGCg -3'
miRNA:   3'- -UGCaGG--CUCCUa----CCCG---UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 112720 0.71 0.61778
Target:  5'- gGCGUCCcuGAGGcccGUGuacaGGCAGGugguCGAGGCg -3'
miRNA:   3'- -UGCAGG--CUCC---UAC----CCGUCCu---GUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 50803 0.66 0.87342
Target:  5'- gGCGUCCGuacGGucccaGGGgGGGAUccuugGGGGCu -3'
miRNA:   3'- -UGCAGGCu--CCua---CCCgUCCUG-----UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 76582 0.66 0.87342
Target:  5'- -gGUCCccguGGGGAccGaGCAGGACGAGGa -3'
miRNA:   3'- ugCAGG----CUCCUacC-CGUCCUGUUCCg -5'
28837 3' -57.3 NC_006146.1 + 139409 0.66 0.872704
Target:  5'- gGCG-CCGGGGGaGGugccugcuguuuaGUAGGAgAAGGCc -3'
miRNA:   3'- -UGCaGGCUCCUaCC-------------CGUCCUgUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 99993 0.66 0.872704
Target:  5'- cGCGUCCucGGGAUcGGGagcGGGCAcgucgggAGGCg -3'
miRNA:   3'- -UGCAGGc-UCCUA-CCCgu-CCUGU-------UCCG- -5'
28837 3' -57.3 NC_006146.1 + 116752 0.66 0.866168
Target:  5'- ----aCGAGGAggaGGGCAGGG--GGGCc -3'
miRNA:   3'- ugcagGCUCCUa--CCCGUCCUguUCCG- -5'
28837 3' -57.3 NC_006146.1 + 117807 0.66 0.865432
Target:  5'- cGCcUCCGGacuagacGGA-GGGgAGGAgGAGGCg -3'
miRNA:   3'- -UGcAGGCU-------CCUaCCCgUCCUgUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 120506 0.67 0.86172
Target:  5'- gGCGgCCGAGGAcgcgagccgcguggaUGcggcGGCGGGACugcuGGCc -3'
miRNA:   3'- -UGCaGGCUCCU---------------AC----CCGUCCUGuu--CCG- -5'
28837 3' -57.3 NC_006146.1 + 144287 0.67 0.818605
Target:  5'- gGC-UCCuGGGGGgaacUGGGCAguGGACAcgGGGCu -3'
miRNA:   3'- -UGcAGG-CUCCU----ACCCGU--CCUGU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 40292 0.67 0.858714
Target:  5'- gGCGggCCaaaGAGGccGGGCAGGcCAaaguAGGCc -3'
miRNA:   3'- -UGCa-GG---CUCCuaCCCGUCCuGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 157113 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 141299 0.68 0.774424
Target:  5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3'
miRNA:   3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.