miRNA display CGI


Results 121 - 140 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28837 3' -57.3 NC_006146.1 + 155951 0.72 0.577763
Target:  5'- gACGgUgGAGGuggccccgGGcGCAGGGCAAGGCg -3'
miRNA:   3'- -UGCaGgCUCCua------CC-CGUCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 152873 0.72 0.577763
Target:  5'- gACGgUgGAGGuggccccgGGcGCAGGGCAAGGCg -3'
miRNA:   3'- -UGCaGgCUCCua------CC-CGUCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 149795 0.72 0.577763
Target:  5'- gACGgUgGAGGuggccccgGGcGCAGGGCAAGGCg -3'
miRNA:   3'- -UGCaGgCUCCua------CC-CGUCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 146717 0.72 0.577763
Target:  5'- gACGgUgGAGGuggccccgGGcGCAGGGCAAGGCg -3'
miRNA:   3'- -UGCaGgCUCCua------CC-CGUCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 143640 0.72 0.577763
Target:  5'- gACGgUgGAGGuggccccgGGcGCAGGGCAAGGCg -3'
miRNA:   3'- -UGCaGgCUCCua------CC-CGUCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 42371 0.72 0.548119
Target:  5'- cGCG-CCGccAGGGUGGGCgaGGGGCGccccaGGGCc -3'
miRNA:   3'- -UGCaGGC--UCCUACCCG--UCCUGU-----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 128664 0.73 0.518969
Target:  5'- gACGg-CGGGGAcGGGCAGGAgAcaacGGGCg -3'
miRNA:   3'- -UGCagGCUCCUaCCCGUCCUgU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 103099 0.73 0.518969
Target:  5'- uACuUCCGAGGcgGGGCAGaGCcuGGCc -3'
miRNA:   3'- -UGcAGGCUCCuaCCCGUCcUGuuCCG- -5'
28837 3' -57.3 NC_006146.1 + 103556 0.74 0.460862
Target:  5'- cCGgaccCCGAGGAUGGGCucgcccgggccuGGGCcGGGCu -3'
miRNA:   3'- uGCa---GGCUCCUACCCGu-----------CCUGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 161764 0.72 0.587728
Target:  5'- -gGUCCGAGG--GGGCGccuGGGCGGGGg -3'
miRNA:   3'- ugCAGGCUCCuaCCCGU---CCUGUUCCg -5'
28837 3' -57.3 NC_006146.1 + 112720 0.71 0.61778
Target:  5'- gGCGUCCcuGAGGcccGUGuacaGGCAGGugguCGAGGCg -3'
miRNA:   3'- -UGCAGG--CUCC---UAC----CCGUCCu---GUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 139361 0.69 0.704721
Target:  5'- gGCGgcgCCGGGGG-GGGUgccugcuguuuaguAGGAgAAGGCc -3'
miRNA:   3'- -UGCa--GGCUCCUaCCCG--------------UCCUgUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 49788 0.7 0.697818
Target:  5'- gUGUCUcAGGAgGGGCAGGAagauGGGUg -3'
miRNA:   3'- uGCAGGcUCCUaCCCGUCCUgu--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 11742 0.7 0.687912
Target:  5'- gUGUCCaaGAcGAccgGGGCAGGGCAAGGa -3'
miRNA:   3'- uGCAGG--CUcCUa--CCCGUCCUGUUCCg -5'
28837 3' -57.3 NC_006146.1 + 110874 0.7 0.686919
Target:  5'- uGCGUCUcGGGcucGGGCgcaggcgGGGACGGGGCc -3'
miRNA:   3'- -UGCAGGcUCCua-CCCG-------UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 100710 0.7 0.65796
Target:  5'- gGCGcUgCGGGGGUGGGUguGGGACc-GGCc -3'
miRNA:   3'- -UGC-AgGCUCCUACCCG--UCCUGuuCCG- -5'
28837 3' -57.3 NC_006146.1 + 28222 0.71 0.646922
Target:  5'- cCGUCCGAcccagccGGA-GGGCAGGugGcuGCg -3'
miRNA:   3'- uGCAGGCU-------CCUaCCCGUCCugUucCG- -5'
28837 3' -57.3 NC_006146.1 + 28030 0.71 0.646922
Target:  5'- cCGUCCGAcccagccGGA-GGGCAGGugGcuGCa -3'
miRNA:   3'- uGCAGGCU-------CCUaCCCGUCCugUucCG- -5'
28837 3' -57.3 NC_006146.1 + 44126 0.71 0.627828
Target:  5'- cCGg-CGAGGAggggGGGCAGGACGuGcGCa -3'
miRNA:   3'- uGCagGCUCCUa---CCCGUCCUGUuC-CG- -5'
28837 3' -57.3 NC_006146.1 + 127836 0.71 0.61778
Target:  5'- aGCcUCCccugGAGGGUGGGCuuGGGCAGccGGCg -3'
miRNA:   3'- -UGcAGG----CUCCUACCCGu-CCUGUU--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.