miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28837 5' -55.7 NC_006146.1 + 114723 0.66 0.929217
Target:  5'- --cCCUGgCGGCCgaguaucgGCGCAUCCUc-- -3'
miRNA:   3'- gauGGACaGCCGGa-------CGUGUAGGAcag -5'
28837 5' -55.7 NC_006146.1 + 42152 0.66 0.923865
Target:  5'- -aGCgUGUCGGCCUGgCACGgacucaccccCCUGcCc -3'
miRNA:   3'- gaUGgACAGCCGGAC-GUGUa---------GGACaG- -5'
28837 5' -55.7 NC_006146.1 + 114681 0.66 0.922766
Target:  5'- aUACCUGacccagacccaGGcCCUGCACGUUCUG-Cg -3'
miRNA:   3'- gAUGGACag---------CC-GGACGUGUAGGACaG- -5'
28837 5' -55.7 NC_006146.1 + 59180 0.67 0.893522
Target:  5'- gUGCCaccuuUGUggUGGCCUGCucCAUCCUG-Ca -3'
miRNA:   3'- gAUGG-----ACA--GCCGGACGu-GUAGGACaG- -5'
28837 5' -55.7 NC_006146.1 + 114602 0.68 0.854336
Target:  5'- -gGCCUGggccaccucgaggCGGCgCUGgACGUCCUGg- -3'
miRNA:   3'- gaUGGACa------------GCCG-GACgUGUAGGACag -5'
28837 5' -55.7 NC_006146.1 + 4889 0.68 0.833308
Target:  5'- -aAUC--UCGGCCUGCGCcgCCUGg- -3'
miRNA:   3'- gaUGGacAGCCGGACGUGuaGGACag -5'
28837 5' -55.7 NC_006146.1 + 23763 0.68 0.824882
Target:  5'- aCUGCCgcggccgagaaUGgCGGCCUGCGCGUCUg--- -3'
miRNA:   3'- -GAUGG-----------ACaGCCGGACGUGUAGGacag -5'
28837 5' -55.7 NC_006146.1 + 7770 0.69 0.798578
Target:  5'- uCUGCCUgGUCGuGCuCUGCGC--CCUGUUu -3'
miRNA:   3'- -GAUGGA-CAGC-CG-GACGUGuaGGACAG- -5'
28837 5' -55.7 NC_006146.1 + 100890 0.69 0.798578
Target:  5'- -gACCUGUCGGCCUGgGuCucggCCgugggGUCc -3'
miRNA:   3'- gaUGGACAGCCGGACgU-Gua--GGa----CAG- -5'
28837 5' -55.7 NC_006146.1 + 91211 0.71 0.672007
Target:  5'- cCUGCCUGUUGGCCggucucugcUGUACAcucaUCCcgcugUGUCg -3'
miRNA:   3'- -GAUGGACAGCCGG---------ACGUGU----AGG-----ACAG- -5'
28837 5' -55.7 NC_006146.1 + 82511 0.71 0.672007
Target:  5'- -gGCCgugGUCagGGCCUGCACG-CCUGg- -3'
miRNA:   3'- gaUGGa--CAG--CCGGACGUGUaGGACag -5'
28837 5' -55.7 NC_006146.1 + 58065 0.73 0.560605
Target:  5'- gCUACCUGUCGGCCcUGCGCuacuacgacaccuaUCUGUa -3'
miRNA:   3'- -GAUGGACAGCCGG-ACGUGua------------GGACAg -5'
28837 5' -55.7 NC_006146.1 + 109916 0.78 0.305827
Target:  5'- aCUGCCUGaUGGCUUGCACAUCCa--- -3'
miRNA:   3'- -GAUGGACaGCCGGACGUGUAGGacag -5'
28837 5' -55.7 NC_006146.1 + 66265 1.11 0.002399
Target:  5'- aCUACCUGUCGGCCUGCACAUCCUGUCa -3'
miRNA:   3'- -GAUGGACAGCCGGACGUGUAGGACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.