miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28838 3' -56.2 NC_006146.1 + 89824 0.66 0.934771
Target:  5'- gGGCGUGGAggugGAGGAGUacuaGGCGaAACUg -3'
miRNA:   3'- -CUGCGCCU----CUCCUCAgg--CUGC-UUGAg -5'
28838 3' -56.2 NC_006146.1 + 155540 0.66 0.929772
Target:  5'- aGCGCGuccGAGAGGGcGUUgGAgcCGGGCUCg -3'
miRNA:   3'- cUGCGC---CUCUCCU-CAGgCU--GCUUGAG- -5'
28838 3' -56.2 NC_006146.1 + 157612 0.66 0.929772
Target:  5'- gGACGCcuGGAGGcGGAc-CCGAgGGGCUCu -3'
miRNA:   3'- -CUGCG--CCUCU-CCUcaGGCUgCUUGAG- -5'
28838 3' -56.2 NC_006146.1 + 142222 0.66 0.929772
Target:  5'- gGACGCcuGGAGGcGGAc-CCGAgGGGCUCu -3'
miRNA:   3'- -CUGCG--CCUCU-CCUcaGGCUgCUUGAG- -5'
28838 3' -56.2 NC_006146.1 + 145300 0.66 0.929772
Target:  5'- gGACGCcuGGAGGcGGAc-CCGAgGGGCUCu -3'
miRNA:   3'- -CUGCG--CCUCU-CCUcaGGCUgCUUGAG- -5'
28838 3' -56.2 NC_006146.1 + 148378 0.66 0.929772
Target:  5'- gGACGCcuGGAGGcGGAc-CCGAgGGGCUCu -3'
miRNA:   3'- -CUGCG--CCUCU-CCUcaGGCUgCUUGAG- -5'
28838 3' -56.2 NC_006146.1 + 154534 0.66 0.929772
Target:  5'- gGACGCcuGGAGGcGGAc-CCGAgGGGCUCu -3'
miRNA:   3'- -CUGCG--CCUCU-CCUcaGGCUgCUUGAG- -5'
28838 3' -56.2 NC_006146.1 + 151456 0.66 0.929772
Target:  5'- gGACGCcuGGAGGcGGAc-CCGAgGGGCUCu -3'
miRNA:   3'- -CUGCG--CCUCU-CCUcaGGCUgCUUGAG- -5'
28838 3' -56.2 NC_006146.1 + 77829 0.66 0.924542
Target:  5'- gGACgGCGGAGGGGGGggcggggggGugGGACUUu -3'
miRNA:   3'- -CUG-CGCCUCUCCUCagg------CugCUUGAG- -5'
28838 3' -56.2 NC_006146.1 + 23982 0.66 0.922385
Target:  5'- aGC-CGGAGAGGGGgcgaaagaggacgCgCGAgGAACUCg -3'
miRNA:   3'- cUGcGCCUCUCCUCa------------G-GCUgCUUGAG- -5'
28838 3' -56.2 NC_006146.1 + 62926 0.66 0.919079
Target:  5'- aGAUGCGGAGGGuGAGgcugugcCUGugGAGgUUa -3'
miRNA:   3'- -CUGCGCCUCUC-CUCa------GGCugCUUgAG- -5'
28838 3' -56.2 NC_006146.1 + 4310 0.66 0.919079
Target:  5'- aGACGCGGGGAuGGcaAGaUCCagGGCGGgucGCUCu -3'
miRNA:   3'- -CUGCGCCUCU-CC--UC-AGG--CUGCU---UGAG- -5'
28838 3' -56.2 NC_006146.1 + 90102 0.66 0.919079
Target:  5'- aGGCaGCGGAGcAGGAGgcaGugGAGCa- -3'
miRNA:   3'- -CUG-CGCCUC-UCCUCaggCugCUUGag -5'
28838 3' -56.2 NC_006146.1 + 123692 0.66 0.915691
Target:  5'- cGugGCGGAGgcggccAGGGGcCuggcgcucggggcggCGGCGGGCUCu -3'
miRNA:   3'- -CugCGCCUC------UCCUCaG---------------GCUGCUUGAG- -5'
28838 3' -56.2 NC_006146.1 + 6225 0.66 0.913385
Target:  5'- gGugGUGGAGAcaGGGGUCCauuCGGGCc- -3'
miRNA:   3'- -CugCGCCUCU--CCUCAGGcu-GCUUGag -5'
28838 3' -56.2 NC_006146.1 + 142995 0.66 0.913385
Target:  5'- aGGCagggaGGAGAGGAGgCCGGgGAGCg- -3'
miRNA:   3'- -CUGcg---CCUCUCCUCaGGCUgCUUGag -5'
28838 3' -56.2 NC_006146.1 + 146073 0.66 0.913385
Target:  5'- aGGCagggaGGAGAGGAGgCCGGgGAGCg- -3'
miRNA:   3'- -CUGcg---CCUCUCCUCaGGCUgCUUGag -5'
28838 3' -56.2 NC_006146.1 + 149151 0.66 0.913385
Target:  5'- aGGCagggaGGAGAGGAGgCCGGgGAGCg- -3'
miRNA:   3'- -CUGcg---CCUCUCCUCaGGCUgCUUGag -5'
28838 3' -56.2 NC_006146.1 + 152229 0.66 0.913385
Target:  5'- aGGCagggaGGAGAGGAGgCCGGgGAGCg- -3'
miRNA:   3'- -CUGcg---CCUCUCCUCaGGCUgCUUGag -5'
28838 3' -56.2 NC_006146.1 + 155307 0.66 0.913385
Target:  5'- aGGCagggaGGAGAGGAGgCCGGgGAGCg- -3'
miRNA:   3'- -CUGcg---CCUCUCCUCaGGCUgCUUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.