miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28838 5' -60.2 NC_006146.1 + 3016 0.66 0.744604
Target:  5'- -cGAGgGUCcccgggccgCCCCGGGGCUCCCcCGc -3'
miRNA:   3'- aaCUCaCAGa--------GGGGUCUCGGGGGaGC- -5'
28838 5' -60.2 NC_006146.1 + 19577 0.66 0.744604
Target:  5'- -aGGGUGcCUCCCCGG-GUCCCa--- -3'
miRNA:   3'- aaCUCACaGAGGGGUCuCGGGGgagc -5'
28838 5' -60.2 NC_006146.1 + 13421 0.66 0.744604
Target:  5'- -aGGGUGcCUCCCCGG-GUCCCa--- -3'
miRNA:   3'- aaCUCACaGAGGGGUCuCGGGGgagc -5'
28838 5' -60.2 NC_006146.1 + 25733 0.66 0.744604
Target:  5'- -aGGGUGcCUCCCCGG-GUCCCa--- -3'
miRNA:   3'- aaCUCACaGAGGGGUCuCGGGGgagc -5'
28838 5' -60.2 NC_006146.1 + 16499 0.66 0.744604
Target:  5'- -aGGGUGcCUCCCCGG-GUCCCa--- -3'
miRNA:   3'- aaCUCACaGAGGGGUCuCGGGGgagc -5'
28838 5' -60.2 NC_006146.1 + 28811 0.66 0.744604
Target:  5'- -aGGGUGcCUCCCCGG-GUCCCa--- -3'
miRNA:   3'- aaCUCACaGAGGGGUCuCGGGGgagc -5'
28838 5' -60.2 NC_006146.1 + 22655 0.66 0.744604
Target:  5'- -aGGGUGcCUCCCCGG-GUCCCa--- -3'
miRNA:   3'- aaCUCACaGAGGGGUCuCGGGGgagc -5'
28838 5' -60.2 NC_006146.1 + 2084 0.66 0.744604
Target:  5'- -cGAGgGUCcccgggccgCCCCGGGGCUCCCcCGc -3'
miRNA:   3'- aaCUCaCAGa--------GGGGUCUCGGGGGaGC- -5'
28838 5' -60.2 NC_006146.1 + 1152 0.66 0.744604
Target:  5'- -cGAGgGUCcccgggccgCCCCGGGGCUCCCcCGc -3'
miRNA:   3'- aaCUCaCAGa--------GGGGUCUCGGGGGaGC- -5'
28838 5' -60.2 NC_006146.1 + 33661 0.66 0.743657
Target:  5'- -gGGGUGUggUCCCCGGgaccccaGGCCCCCa-- -3'
miRNA:   3'- aaCUCACAg-AGGGGUC-------UCGGGGGagc -5'
28838 5' -60.2 NC_006146.1 + 109409 0.66 0.743657
Target:  5'- -aGGG-GcCUCCUCGGAGCCCUggugauccugccaCUCGg -3'
miRNA:   3'- aaCUCaCaGAGGGGUCUCGGGG-------------GAGC- -5'
28838 5' -60.2 NC_006146.1 + 167832 0.66 0.725511
Target:  5'- --cGG-GUCUUCCCGGGcuCCCCCUCa -3'
miRNA:   3'- aacUCaCAGAGGGGUCUc-GGGGGAGc -5'
28838 5' -60.2 NC_006146.1 + 170628 0.66 0.725511
Target:  5'- --cGG-GUCUUCCCGGGcuCCCCCUCa -3'
miRNA:   3'- aacUCaCAGAGGGGUCUc-GGGGGAGc -5'
28838 5' -60.2 NC_006146.1 + 169696 0.66 0.725511
Target:  5'- --cGG-GUCUUCCCGGGcuCCCCCUCa -3'
miRNA:   3'- aacUCaCAGAGGGGUCUc-GGGGGAGc -5'
28838 5' -60.2 NC_006146.1 + 168764 0.66 0.725511
Target:  5'- --cGG-GUCUUCCCGGGcuCCCCCUCa -3'
miRNA:   3'- aacUCaCAGAGGGGUCUc-GGGGGAGc -5'
28838 5' -60.2 NC_006146.1 + 70981 0.66 0.715846
Target:  5'- -gGGGUGcga-CCCGGAGCCCgCUCu -3'
miRNA:   3'- aaCUCACagagGGGUCUCGGGgGAGc -5'
28838 5' -60.2 NC_006146.1 + 33848 0.66 0.714876
Target:  5'- -gGGGUGUggUCCCCGGAaccccagGCCCCCa-- -3'
miRNA:   3'- aaCUCACAg-AGGGGUCU-------CGGGGGagc -5'
28838 5' -60.2 NC_006146.1 + 25582 0.67 0.69632
Target:  5'- -aGGGgacCggcgCCCCAGAG-CCCCUCGg -3'
miRNA:   3'- aaCUCacaGa---GGGGUCUCgGGGGAGC- -5'
28838 5' -60.2 NC_006146.1 + 19426 0.67 0.69632
Target:  5'- -aGGGgacCggcgCCCCAGAG-CCCCUCGg -3'
miRNA:   3'- aaCUCacaGa---GGGGUCUCgGGGGAGC- -5'
28838 5' -60.2 NC_006146.1 + 16348 0.67 0.69632
Target:  5'- -aGGGgacCggcgCCCCAGAG-CCCCUCGg -3'
miRNA:   3'- aaCUCacaGa---GGGGUCUCgGGGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.