miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28838 5' -60.2 NC_006146.1 + 28660 0.67 0.69632
Target:  5'- -aGGGgacCggcgCCCCAGAG-CCCCUCGg -3'
miRNA:   3'- aaCUCacaGa---GGGGUCUCgGGGGAGC- -5'
28838 5' -60.2 NC_006146.1 + 19426 0.67 0.69632
Target:  5'- -aGGGgacCggcgCCCCAGAG-CCCCUCGg -3'
miRNA:   3'- aaCUCacaGa---GGGGUCUCgGGGGAGC- -5'
28838 5' -60.2 NC_006146.1 + 129493 0.67 0.69632
Target:  5'- -cGGGUGcC-CCCCAGgcggacaucaGGCCCaCCUCa -3'
miRNA:   3'- aaCUCACaGaGGGGUC----------UCGGG-GGAGc -5'
28838 5' -60.2 NC_006146.1 + 22504 0.67 0.69632
Target:  5'- -aGGGgacCggcgCCCCAGAG-CCCCUCGg -3'
miRNA:   3'- aaCUCacaGa---GGGGUCUCgGGGGAGC- -5'
28838 5' -60.2 NC_006146.1 + 142484 0.67 0.686476
Target:  5'- -gGAGUGa---CCCGGAGCCgCCUCc -3'
miRNA:   3'- aaCUCACagagGGGUCUCGGgGGAGc -5'
28838 5' -60.2 NC_006146.1 + 42380 0.67 0.676589
Target:  5'- -aGGGUGggCgaggggcgCCCCAGGGCCaCCC-CGa -3'
miRNA:   3'- aaCUCACa-Ga-------GGGGUCUCGG-GGGaGC- -5'
28838 5' -60.2 NC_006146.1 + 129678 0.67 0.666668
Target:  5'- -aGGGccgGUCUCUUCAGcGCCgCCUCGa -3'
miRNA:   3'- aaCUCa--CAGAGGGGUCuCGGgGGAGC- -5'
28838 5' -60.2 NC_006146.1 + 18996 0.67 0.646754
Target:  5'- -gGAGccagaCCCCAGugggGGCCCCCUCGa -3'
miRNA:   3'- aaCUCacagaGGGGUC----UCGGGGGAGC- -5'
28838 5' -60.2 NC_006146.1 + 156031 0.68 0.616818
Target:  5'- cUGuAGuUGUCcagcUCCCUGGcuGCCCCCUCGg -3'
miRNA:   3'- aAC-UC-ACAG----AGGGGUCu-CGGGGGAGC- -5'
28838 5' -60.2 NC_006146.1 + 54642 0.68 0.606852
Target:  5'- --cGGUGgCUCCCCgggcauuggaGGGGCCCCgUCGu -3'
miRNA:   3'- aacUCACaGAGGGG----------UCUCGGGGgAGC- -5'
28838 5' -60.2 NC_006146.1 + 145448 0.7 0.48761
Target:  5'- -gGAGUGUCaUgCCCaccuugacguuuagAGGGCCCUCUCGu -3'
miRNA:   3'- aaCUCACAG-AgGGG--------------UCUCGGGGGAGC- -5'
28838 5' -60.2 NC_006146.1 + 123733 0.71 0.462827
Target:  5'- -cGGGc-UCUCCCCAGuauGCCUCCUCa -3'
miRNA:   3'- aaCUCacAGAGGGGUCu--CGGGGGAGc -5'
28838 5' -60.2 NC_006146.1 + 87259 0.71 0.453817
Target:  5'- -gGAG-GUCUggCCCgCAGAGCCCCCg-- -3'
miRNA:   3'- aaCUCaCAGA--GGG-GUCUCGGGGGagc -5'
28838 5' -60.2 NC_006146.1 + 162626 0.71 0.42478
Target:  5'- -gGAGUGgggCUCCCagAGAgaacgggggugcauGCCCCCUCGu -3'
miRNA:   3'- aaCUCACa--GAGGGg-UCU--------------CGGGGGAGC- -5'
28838 5' -60.2 NC_006146.1 + 125487 0.71 0.417909
Target:  5'- aUUGAGcaugguaGUUUuuccaacCCCCGGAGCCCCCUCc -3'
miRNA:   3'- -AACUCa------CAGA-------GGGGUCUCGGGGGAGc -5'
28838 5' -60.2 NC_006146.1 + 128516 0.72 0.385407
Target:  5'- -gGGGUGg--CCCUGGGGCgCCCCUCGc -3'
miRNA:   3'- aaCUCACagaGGGGUCUCG-GGGGAGC- -5'
28838 5' -60.2 NC_006146.1 + 54501 0.75 0.264293
Target:  5'- -gGAGgagaCUCCCCAGGGCCCCgCUCc -3'
miRNA:   3'- aaCUCaca-GAGGGGUCUCGGGG-GAGc -5'
28838 5' -60.2 NC_006146.1 + 65912 1.07 0.001722
Target:  5'- gUUGAGUGUCUCCCCAGAGCCCCCUCGg -3'
miRNA:   3'- -AACUCACAGAGGGGUCUCGGGGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.