miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28839 3' -57.8 NC_006146.1 + 102896 0.66 0.844099
Target:  5'- gGGGAcgccaGGGGCCgUGUggcguggcugCgccccaagaucguggGCUGCCUGCg -3'
miRNA:   3'- -UCCU-----CCCCGGgAUAa---------Ga--------------CGACGGAUG- -5'
28839 3' -57.8 NC_006146.1 + 57065 0.66 0.832649
Target:  5'- cGGGAGGGGgCCUGacgcggauggccaacCUGCUGUacgACa -3'
miRNA:   3'- -UCCUCCCCgGGAUaa-------------GACGACGga-UG- -5'
28839 3' -57.8 NC_006146.1 + 23425 0.66 0.817407
Target:  5'- cGGAGGGGCaguaccacaagcuCCgg--CUGCccgucucgGCCUACg -3'
miRNA:   3'- uCCUCCCCG-------------GGauaaGACGa-------CGGAUG- -5'
28839 3' -57.8 NC_006146.1 + 72393 0.66 0.80958
Target:  5'- cGGGuGGGGCCCcuccAUcacaggagucUCUGCUGaCCUu- -3'
miRNA:   3'- -UCCuCCCCGGGa---UA----------AGACGAC-GGAug -5'
28839 3' -57.8 NC_006146.1 + 97807 0.66 0.80958
Target:  5'- ---cGGGGCCCggacgCUGCUGUCcACc -3'
miRNA:   3'- uccuCCCCGGGauaa-GACGACGGaUG- -5'
28839 3' -57.8 NC_006146.1 + 88862 0.66 0.800731
Target:  5'- cGGcGGGGCCUggggCUGUUGUggCUGCa -3'
miRNA:   3'- uCCuCCCCGGGauaaGACGACG--GAUG- -5'
28839 3' -57.8 NC_006146.1 + 14533 0.66 0.800731
Target:  5'- uGGAGagccuggaccGGGCCCUGgagCUGCUggGCCg-- -3'
miRNA:   3'- uCCUC----------CCCGGGAUaa-GACGA--CGGaug -5'
28839 3' -57.8 NC_006146.1 + 136375 0.68 0.735024
Target:  5'- uGGAGGGGaCCCUccugaaGCUccGCCUACc -3'
miRNA:   3'- uCCUCCCC-GGGAuaaga-CGA--CGGAUG- -5'
28839 3' -57.8 NC_006146.1 + 101834 0.68 0.715312
Target:  5'- cGGcGGGGCCCgagcgcUCggGCUGCCg-- -3'
miRNA:   3'- uCCuCCCCGGGaua---AGa-CGACGGaug -5'
28839 3' -57.8 NC_006146.1 + 153443 0.68 0.705345
Target:  5'- uGGAGGGGCCggUGUUgUGUUguugcccuccGCCUGCc -3'
miRNA:   3'- uCCUCCCCGGg-AUAAgACGA----------CGGAUG- -5'
28839 3' -57.8 NC_006146.1 + 168231 0.68 0.695317
Target:  5'- cGGGAGGGGCCg------GC-GCCUGCa -3'
miRNA:   3'- -UCCUCCCCGGgauaagaCGaCGGAUG- -5'
28839 3' -57.8 NC_006146.1 + 169163 0.68 0.695317
Target:  5'- cGGGAGGGGCCg------GC-GCCUGCa -3'
miRNA:   3'- -UCCUCCCCGGgauaagaCGaCGGAUG- -5'
28839 3' -57.8 NC_006146.1 + 39051 0.68 0.695317
Target:  5'- cAGGcAGGGGCCCUGUgaaUGgUcGCCgGCc -3'
miRNA:   3'- -UCC-UCCCCGGGAUAag-ACgA-CGGaUG- -5'
28839 3' -57.8 NC_006146.1 + 139165 0.68 0.695317
Target:  5'- cGGGGGGGCgCCUGUgaggcggCUGUUGUUg-- -3'
miRNA:   3'- uCCUCCCCG-GGAUAa------GACGACGGaug -5'
28839 3' -57.8 NC_006146.1 + 167299 0.68 0.695317
Target:  5'- cGGGAGGGGCCg------GC-GCCUGCa -3'
miRNA:   3'- -UCCUCCCCGGgauaagaCGaCGGAUG- -5'
28839 3' -57.8 NC_006146.1 + 51582 0.69 0.654766
Target:  5'- cGGGAGGGGCCCggg---GgaGCCa-- -3'
miRNA:   3'- -UCCUCCCCGGGauaagaCgaCGGaug -5'
28839 3' -57.8 NC_006146.1 + 92084 0.7 0.583404
Target:  5'- uGGGGGGcGGCCCggccugGggCUGCUGCUn-- -3'
miRNA:   3'- -UCCUCC-CCGGGa-----UaaGACGACGGaug -5'
28839 3' -57.8 NC_006146.1 + 124529 0.7 0.583404
Target:  5'- aGGGAcGGGGgCCUGggggagCUGCUGUCggACg -3'
miRNA:   3'- -UCCU-CCCCgGGAUaa----GACGACGGa-UG- -5'
28839 3' -57.8 NC_006146.1 + 92234 0.7 0.571275
Target:  5'- gGGGGGcGGGCCCggccuguggCUGCUGCUn-- -3'
miRNA:   3'- -UCCUC-CCCGGGauaa-----GACGACGGaug -5'
28839 3' -57.8 NC_006146.1 + 15029 0.73 0.456807
Target:  5'- aGGGAGGGGCgCCUGgccaggGCccgccggGCCUGCg -3'
miRNA:   3'- -UCCUCCCCG-GGAUaaga--CGa------CGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.