Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28839 | 3' | -57.8 | NC_006146.1 | + | 88862 | 0.66 | 0.800731 |
Target: 5'- cGGcGGGGCCUggggCUGUUGUggCUGCa -3' miRNA: 3'- uCCuCCCCGGGauaaGACGACG--GAUG- -5' |
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28839 | 3' | -57.8 | NC_006146.1 | + | 72393 | 0.66 | 0.80958 |
Target: 5'- cGGGuGGGGCCCcuccAUcacaggagucUCUGCUGaCCUu- -3' miRNA: 3'- -UCCuCCCCGGGa---UA----------AGACGAC-GGAug -5' |
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28839 | 3' | -57.8 | NC_006146.1 | + | 97807 | 0.66 | 0.80958 |
Target: 5'- ---cGGGGCCCggacgCUGCUGUCcACc -3' miRNA: 3'- uccuCCCCGGGauaa-GACGACGGaUG- -5' |
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28839 | 3' | -57.8 | NC_006146.1 | + | 23425 | 0.66 | 0.817407 |
Target: 5'- cGGAGGGGCaguaccacaagcuCCgg--CUGCccgucucgGCCUACg -3' miRNA: 3'- uCCUCCCCG-------------GGauaaGACGa-------CGGAUG- -5' |
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28839 | 3' | -57.8 | NC_006146.1 | + | 57065 | 0.66 | 0.832649 |
Target: 5'- cGGGAGGGGgCCUGacgcggauggccaacCUGCUGUacgACa -3' miRNA: 3'- -UCCUCCCCgGGAUaa-------------GACGACGga-UG- -5' |
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28839 | 3' | -57.8 | NC_006146.1 | + | 102896 | 0.66 | 0.844099 |
Target: 5'- gGGGAcgccaGGGGCCgUGUggcguggcugCgccccaagaucguggGCUGCCUGCg -3' miRNA: 3'- -UCCU-----CCCCGGgAUAa---------Ga--------------CGACGGAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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