Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28839 | 3' | -57.8 | NC_006146.1 | + | 136375 | 0.68 | 0.735024 |
Target: 5'- uGGAGGGGaCCCUccugaaGCUccGCCUACc -3' miRNA: 3'- uCCUCCCC-GGGAuaaga-CGA--CGGAUG- -5' |
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28839 | 3' | -57.8 | NC_006146.1 | + | 139165 | 0.68 | 0.695317 |
Target: 5'- cGGGGGGGCgCCUGUgaggcggCUGUUGUUg-- -3' miRNA: 3'- uCCUCCCCG-GGAUAa------GACGACGGaug -5' |
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28839 | 3' | -57.8 | NC_006146.1 | + | 153443 | 0.68 | 0.705345 |
Target: 5'- uGGAGGGGCCggUGUUgUGUUguugcccuccGCCUGCc -3' miRNA: 3'- uCCUCCCCGGg-AUAAgACGA----------CGGAUG- -5' |
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28839 | 3' | -57.8 | NC_006146.1 | + | 167299 | 0.68 | 0.695317 |
Target: 5'- cGGGAGGGGCCg------GC-GCCUGCa -3' miRNA: 3'- -UCCUCCCCGGgauaagaCGaCGGAUG- -5' |
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28839 | 3' | -57.8 | NC_006146.1 | + | 168231 | 0.68 | 0.695317 |
Target: 5'- cGGGAGGGGCCg------GC-GCCUGCa -3' miRNA: 3'- -UCCUCCCCGGgauaagaCGaCGGAUG- -5' |
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28839 | 3' | -57.8 | NC_006146.1 | + | 169163 | 0.68 | 0.695317 |
Target: 5'- cGGGAGGGGCCg------GC-GCCUGCa -3' miRNA: 3'- -UCCUCCCCGGgauaagaCGaCGGAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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