miRNA display CGI


Results 1 - 20 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28839 5' -57.7 NC_006146.1 + 126419 0.66 0.848526
Target:  5'- -gGUCGCGAGCaCGGCAc--AGGCCa- -3'
miRNA:   3'- ugCGGCGCUCG-GUUGUaucUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 85912 0.66 0.848526
Target:  5'- -aGCCGCGGGgCuuuACccuGGGGCCUg -3'
miRNA:   3'- ugCGGCGCUCgGu--UGuauCUCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 55546 0.66 0.848526
Target:  5'- cCGCCGCcacGCCGGCcaGGAaGGCCUc -3'
miRNA:   3'- uGCGGCGcu-CGGUUGuaUCU-CCGGAa -5'
28839 5' -57.7 NC_006146.1 + 52092 0.66 0.848526
Target:  5'- -gGUCGgGGGCCGGC---GAGGCCa- -3'
miRNA:   3'- ugCGGCgCUCGGUUGuauCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 46717 0.66 0.848526
Target:  5'- -gGCCGCGgcGGCUccgaGGCGggcGGAGGCCa- -3'
miRNA:   3'- ugCGGCGC--UCGG----UUGUa--UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 114120 0.66 0.848526
Target:  5'- cCGCCGCGcucaCCGA---GGAGGCCUg -3'
miRNA:   3'- uGCGGCGCuc--GGUUguaUCUCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 31834 0.66 0.840479
Target:  5'- cGCGCCaccaGGGCCcgUAUGGuGGCCg- -3'
miRNA:   3'- -UGCGGcg--CUCGGuuGUAUCuCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 103748 0.66 0.840479
Target:  5'- gACGCCGCGcucaggagcGGCCAGCGgcucccGGUCUUc -3'
miRNA:   3'- -UGCGGCGC---------UCGGUUGUaucu--CCGGAA- -5'
28839 5' -57.7 NC_006146.1 + 94613 0.66 0.840479
Target:  5'- -aGCCGCGuccAGCCcACGUAcuGGGCCg- -3'
miRNA:   3'- ugCGGCGC---UCGGuUGUAUc-UCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 157860 0.66 0.840479
Target:  5'- aGCGCCGCcuggaaaaguuGuGCCAcAgGUAGAGGCUc- -3'
miRNA:   3'- -UGCGGCG-----------CuCGGU-UgUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 158952 0.66 0.832242
Target:  5'- gGCGuaGCGGGCCAGgaaGUugggagaagaaGGAGGCCg- -3'
miRNA:   3'- -UGCggCGCUCGGUUg--UA-----------UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 51574 0.66 0.832242
Target:  5'- gGCGCCGCcgggagGGGCCcgggggAGCcagAGGGGCCa- -3'
miRNA:   3'- -UGCGGCG------CUCGG------UUGua-UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 95036 0.66 0.832242
Target:  5'- cCGCCGacaaaugGAGCgaGACAUGGGGGCUc- -3'
miRNA:   3'- uGCGGCg------CUCGg-UUGUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 155779 0.66 0.831408
Target:  5'- cCGCCGCagaaGAGCCGcucggugGCccUGGGGGCCa- -3'
miRNA:   3'- uGCGGCG----CUCGGU-------UGu-AUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 45130 0.66 0.828896
Target:  5'- cCGCCGgGAGCCuugggcuuuGCGggcugggugggacGGAGGCCUc -3'
miRNA:   3'- uGCGGCgCUCGGu--------UGUa------------UCUCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 108894 0.66 0.824673
Target:  5'- aGCGCCGCG-GCCAGCGagucagcagcgaccgAGcaggugacguGGGCCUc -3'
miRNA:   3'- -UGCGGCGCuCGGUUGUa--------------UC----------UCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 66527 0.66 0.823824
Target:  5'- cACGCCGCu-GUCaAACAgGGGGGCCc- -3'
miRNA:   3'- -UGCGGCGcuCGG-UUGUaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 159349 0.66 0.823824
Target:  5'- uGCGCCGCcu-CCAGCAUggcGGGGGCgUa -3'
miRNA:   3'- -UGCGGCGcucGGUUGUA---UCUCCGgAa -5'
28839 5' -57.7 NC_006146.1 + 68564 0.66 0.823824
Target:  5'- cCGCUgGCGAGCCGAgAUcGAucugGGCCUg -3'
miRNA:   3'- uGCGG-CGCUCGGUUgUAuCU----CCGGAa -5'
28839 5' -57.7 NC_006146.1 + 127414 0.66 0.814363
Target:  5'- cCGCCGCcgGAGCCggUGUcaacggccgccgaGGAGGCUg- -3'
miRNA:   3'- uGCGGCG--CUCGGuuGUA-------------UCUCCGGaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.