miRNA display CGI


Results 1 - 20 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28839 5' -57.7 NC_006146.1 + 126419 0.66 0.848526
Target:  5'- -gGUCGCGAGCaCGGCAc--AGGCCa- -3'
miRNA:   3'- ugCGGCGCUCG-GUUGUaucUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 68564 0.66 0.823824
Target:  5'- cCGCUgGCGAGCCGAgAUcGAucugGGCCUg -3'
miRNA:   3'- uGCGG-CGCUCGGUUgUAuCU----CCGGAa -5'
28839 5' -57.7 NC_006146.1 + 159349 0.66 0.823824
Target:  5'- uGCGCCGCcu-CCAGCAUggcGGGGGCgUa -3'
miRNA:   3'- -UGCGGCGcucGGUUGUA---UCUCCGgAa -5'
28839 5' -57.7 NC_006146.1 + 55546 0.66 0.848526
Target:  5'- cCGCCGCcacGCCGGCcaGGAaGGCCUc -3'
miRNA:   3'- uGCGGCGcu-CGGUUGuaUCU-CCGGAa -5'
28839 5' -57.7 NC_006146.1 + 56131 0.66 0.806472
Target:  5'- -gGCCGCGGGCCccgaGACcgAGAgcaccuccccgcGGCCg- -3'
miRNA:   3'- ugCGGCGCUCGG----UUGuaUCU------------CCGGaa -5'
28839 5' -57.7 NC_006146.1 + 167571 0.66 0.806472
Target:  5'- gGC-CCGCGgagaGGCCGuguGUGGAGGCCg- -3'
miRNA:   3'- -UGcGGCGC----UCGGUug-UAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 55478 0.66 0.806472
Target:  5'- -gGCCGCGGGCgAGaac-GAGGCCc- -3'
miRNA:   3'- ugCGGCGCUCGgUUguauCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 170366 0.66 0.806472
Target:  5'- gGC-CCGCGgagaGGCCGuguGUGGAGGCCg- -3'
miRNA:   3'- -UGcGGCGC----UCGGUug-UAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 39024 0.66 0.814362
Target:  5'- gUGUCGCaacccaaacauggGGGCCAGCAggcAGGGGCCc- -3'
miRNA:   3'- uGCGGCG-------------CUCGGUUGUa--UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 66527 0.66 0.823824
Target:  5'- cACGCCGCu-GUCaAACAgGGGGGCCc- -3'
miRNA:   3'- -UGCGGCGcuCGG-UUGUaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 169435 0.66 0.806472
Target:  5'- gGC-CCGCGgagaGGCCGuguGUGGAGGCCg- -3'
miRNA:   3'- -UGcGGCGC----UCGGUug-UAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 168503 0.66 0.806472
Target:  5'- gGC-CCGCGgagaGGCCGuguGUGGAGGCCg- -3'
miRNA:   3'- -UGcGGCGC----UCGGUug-UAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 114120 0.66 0.848526
Target:  5'- cCGCCGCGcucaCCGA---GGAGGCCUg -3'
miRNA:   3'- uGCGGCGCuc--GGUUguaUCUCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 103748 0.66 0.840479
Target:  5'- gACGCCGCGcucaggagcGGCCAGCGgcucccGGUCUUc -3'
miRNA:   3'- -UGCGGCGC---------UCGGUUGUaucu--CCGGAA- -5'
28839 5' -57.7 NC_006146.1 + 95036 0.66 0.832242
Target:  5'- cCGCCGacaaaugGAGCgaGACAUGGGGGCUc- -3'
miRNA:   3'- uGCGGCg------CUCGg-UUGUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 51574 0.66 0.832242
Target:  5'- gGCGCCGCcgggagGGGCCcgggggAGCcagAGGGGCCa- -3'
miRNA:   3'- -UGCGGCG------CUCGG------UUGua-UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 108894 0.66 0.824673
Target:  5'- aGCGCCGCG-GCCAGCGagucagcagcgaccgAGcaggugacguGGGCCUc -3'
miRNA:   3'- -UGCGGCGCuCGGUUGUa--------------UC----------UCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 127414 0.66 0.814363
Target:  5'- cCGCCGCcgGAGCCggUGUcaacggccgccgaGGAGGCUg- -3'
miRNA:   3'- uGCGGCG--CUCGGuuGUA-------------UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 117709 0.66 0.806472
Target:  5'- cACGCCGCcccccaaGGCCGGgGccGAGGCCg- -3'
miRNA:   3'- -UGCGGCGc------UCGGUUgUauCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 40280 0.66 0.806472
Target:  5'- gGCGCgggcggagGCGGGCCAA---AGAGGCCg- -3'
miRNA:   3'- -UGCGg-------CGCUCGGUUguaUCUCCGGaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.