miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28839 5' -57.7 NC_006146.1 + 127414 0.66 0.814363
Target:  5'- cCGCCGCcgGAGCCggUGUcaacggccgccgaGGAGGCUg- -3'
miRNA:   3'- uGCGGCG--CUCGGuuGUA-------------UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 108894 0.66 0.824673
Target:  5'- aGCGCCGCG-GCCAGCGagucagcagcgaccgAGcaggugacguGGGCCUc -3'
miRNA:   3'- -UGCGGCGCuCGGUUGUa--------------UC----------UCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 51574 0.66 0.832242
Target:  5'- gGCGCCGCcgggagGGGCCcgggggAGCcagAGGGGCCa- -3'
miRNA:   3'- -UGCGGCG------CUCGG------UUGua-UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 95036 0.66 0.832242
Target:  5'- cCGCCGacaaaugGAGCgaGACAUGGGGGCUc- -3'
miRNA:   3'- uGCGGCg------CUCGg-UUGUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 103748 0.66 0.840479
Target:  5'- gACGCCGCGcucaggagcGGCCAGCGgcucccGGUCUUc -3'
miRNA:   3'- -UGCGGCGC---------UCGGUUGUaucu--CCGGAA- -5'
28839 5' -57.7 NC_006146.1 + 114120 0.66 0.848526
Target:  5'- cCGCCGCGcucaCCGA---GGAGGCCUg -3'
miRNA:   3'- uGCGGCGCuc--GGUUguaUCUCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 155779 0.66 0.831408
Target:  5'- cCGCCGCagaaGAGCCGcucggugGCccUGGGGGCCa- -3'
miRNA:   3'- uGCGGCG----CUCGGU-------UGu-AUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 94613 0.66 0.840479
Target:  5'- -aGCCGCGuccAGCCcACGUAcuGGGCCg- -3'
miRNA:   3'- ugCGGCGC---UCGGuUGUAUc-UCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 126419 0.66 0.848526
Target:  5'- -gGUCGCGAGCaCGGCAc--AGGCCa- -3'
miRNA:   3'- ugCGGCGCUCG-GUUGUaucUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 170366 0.66 0.806472
Target:  5'- gGC-CCGCGgagaGGCCGuguGUGGAGGCCg- -3'
miRNA:   3'- -UGcGGCGC----UCGGUug-UAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 57924 0.67 0.760483
Target:  5'- cGCGCacgGUG-GCCGaguACAUGGAGGUCUUc -3'
miRNA:   3'- -UGCGg--CGCuCGGU---UGUAUCUCCGGAA- -5'
28839 5' -57.7 NC_006146.1 + 167361 0.67 0.750908
Target:  5'- cGCGCgGCGGcGCCGGCc-GGGGGCUg- -3'
miRNA:   3'- -UGCGgCGCU-CGGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 76726 0.67 0.760483
Target:  5'- cACGCU-CGAgGCCGACAgcuucgUGGAGGCCc- -3'
miRNA:   3'- -UGCGGcGCU-CGGUUGU------AUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 110995 0.67 0.779283
Target:  5'- -aGCCGCGcaccagcagguuGGCCAGCGUGcuGGCCc- -3'
miRNA:   3'- ugCGGCGC------------UCGGUUGUAUcuCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 47510 0.67 0.769944
Target:  5'- cCGCCGCGgccaguuccAGCCAGguUGcGGGGCCc- -3'
miRNA:   3'- uGCGGCGC---------UCGGUUguAU-CUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 121417 0.67 0.779283
Target:  5'- cACGCCGCcccuGGCCGACAccGcGGCCc- -3'
miRNA:   3'- -UGCGGCGc---UCGGUUGUauCuCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 47244 0.67 0.779283
Target:  5'- cUGgCGCGGGUCGACGUGGccccuGGCCc- -3'
miRNA:   3'- uGCgGCGCUCGGUUGUAUCu----CCGGaa -5'
28839 5' -57.7 NC_006146.1 + 96431 0.67 0.769944
Target:  5'- aGCGCCGCucaaGGCCAucgugggcCAUGGGGGCa-- -3'
miRNA:   3'- -UGCGGCGc---UCGGUu-------GUAUCUCCGgaa -5'
28839 5' -57.7 NC_006146.1 + 83754 0.67 0.788489
Target:  5'- -gGCCGUGAGCa---GUGGGuGGCCUg -3'
miRNA:   3'- ugCGGCGCUCGguugUAUCU-CCGGAa -5'
28839 5' -57.7 NC_006146.1 + 145267 0.67 0.787575
Target:  5'- aGCGCCGUgaucuugGAGCUGAg--GGGGGCCUc -3'
miRNA:   3'- -UGCGGCG-------CUCGGUUguaUCUCCGGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.