miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28839 5' -57.7 NC_006146.1 + 68712 0.67 0.779283
Target:  5'- gACGCCGUccgcguccccgaGAGCUgucgcgggGugGUGGAGGCCc- -3'
miRNA:   3'- -UGCGGCG------------CUCGG--------UugUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 47264 0.67 0.757622
Target:  5'- cACGCCGUGAGCgAgaccggcgacggcuGCGUGGAccuccgcuggcuGGCCa- -3'
miRNA:   3'- -UGCGGCGCUCGgU--------------UGUAUCU------------CCGGaa -5'
28839 5' -57.7 NC_006146.1 + 76726 0.67 0.760483
Target:  5'- cACGCU-CGAgGCCGACAgcuucgUGGAGGCCc- -3'
miRNA:   3'- -UGCGGcGCU-CGGUUGU------AUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 110995 0.67 0.779283
Target:  5'- -aGCCGCGcaccagcagguuGGCCAGCGUGcuGGCCc- -3'
miRNA:   3'- ugCGGCGC------------UCGGUUGUAUcuCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 121417 0.67 0.779283
Target:  5'- cACGCCGCcccuGGCCGACAccGcGGCCc- -3'
miRNA:   3'- -UGCGGCGc---UCGGUUGUauCuCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 83754 0.67 0.788489
Target:  5'- -gGCCGUGAGCa---GUGGGuGGCCUg -3'
miRNA:   3'- ugCGGCGCUCGguugUAUCU-CCGGAa -5'
28839 5' -57.7 NC_006146.1 + 124463 0.67 0.788489
Target:  5'- uACGCCGCc-GCCuuCcUGGGGGCCc- -3'
miRNA:   3'- -UGCGGCGcuCGGuuGuAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 128181 0.67 0.797555
Target:  5'- gACGCCGgGAGgCGGCccagGGGGGCg-- -3'
miRNA:   3'- -UGCGGCgCUCgGUUGua--UCUCCGgaa -5'
28839 5' -57.7 NC_006146.1 + 60468 0.67 0.797555
Target:  5'- -gGCCGCGGGg-AGCGgugAGAGGCCg- -3'
miRNA:   3'- ugCGGCGCUCggUUGUa--UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 47510 0.67 0.769944
Target:  5'- cCGCCGCGgccaguuccAGCCAGguUGcGGGGCCc- -3'
miRNA:   3'- uGCGGCGC---------UCGGUUguAU-CUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 96431 0.67 0.769944
Target:  5'- aGCGCCGCucaaGGCCAucgugggcCAUGGGGGCa-- -3'
miRNA:   3'- -UGCGGCGc---UCGGUu-------GUAUCUCCGgaa -5'
28839 5' -57.7 NC_006146.1 + 57924 0.67 0.760483
Target:  5'- cGCGCacgGUG-GCCGaguACAUGGAGGUCUUc -3'
miRNA:   3'- -UGCGg--CGCuCGGU---UGUAUCUCCGGAA- -5'
28839 5' -57.7 NC_006146.1 + 168293 0.67 0.750908
Target:  5'- cGCGCgGCGGcGCCGGCc-GGGGGCUg- -3'
miRNA:   3'- -UGCGgCGCU-CGGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 170156 0.67 0.750908
Target:  5'- cGCGCgGCGGcGCCGGCc-GGGGGCUg- -3'
miRNA:   3'- -UGCGgCGCU-CGGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 169225 0.67 0.750908
Target:  5'- cGCGCgGCGGcGCCGGCc-GGGGGCUg- -3'
miRNA:   3'- -UGCGgCGCU-CGGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 47244 0.67 0.779283
Target:  5'- cUGgCGCGGGUCGACGUGGccccuGGCCc- -3'
miRNA:   3'- uGCgGCGCUCGGUUGUAUCu----CCGGaa -5'
28839 5' -57.7 NC_006146.1 + 58850 0.68 0.71862
Target:  5'- uGCGCCGUcaaGGCCGGCAgccccuucauccugUgaaGGAGGCCUg -3'
miRNA:   3'- -UGCGGCGc--UCGGUUGU--------------A---UCUCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 130528 0.68 0.731454
Target:  5'- cGCGCCGgGcGgCGACcaGGGGGCCUUc -3'
miRNA:   3'- -UGCGGCgCuCgGUUGuaUCUCCGGAA- -5'
28839 5' -57.7 NC_006146.1 + 42890 0.68 0.741229
Target:  5'- aACuuUGCGGGCCGACGcUAG-GGCCUc -3'
miRNA:   3'- -UGcgGCGCUCGGUUGU-AUCuCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 59052 0.68 0.745112
Target:  5'- gGCGCaGCGGGCCGACAcgcagGGcgacgagcucuugcuGGGCCUc -3'
miRNA:   3'- -UGCGgCGCUCGGUUGUa----UC---------------UCCGGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.