Results 1 - 20 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28839 | 5' | -57.7 | NC_006146.1 | + | 65125 | 1.04 | 0.003816 |
Target: 5'- cACGCCGCGAGCCAACAUAGAGGCCUUc -3' miRNA: 3'- -UGCGGCGCUCGGUUGUAUCUCCGGAA- -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 75659 | 0.78 | 0.236161 |
Target: 5'- gACGCCGCGGGUCAGCAgucauGGCCg- -3' miRNA: 3'- -UGCGGCGCUCGGUUGUaucu-CCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 42639 | 0.75 | 0.328094 |
Target: 5'- cCGCCGUGGGCCucACGUAGuGGGCCc- -3' miRNA: 3'- uGCGGCGCUCGGu-UGUAUC-UCCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 115118 | 0.75 | 0.328094 |
Target: 5'- -aGUCGCuGGCCAGCGUGGuGGCCUc -3' miRNA: 3'- ugCGGCGcUCGGUUGUAUCuCCGGAa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 59886 | 0.74 | 0.408521 |
Target: 5'- cACGCCGCGcgGGCCAGCAcgcuGGCCa- -3' miRNA: 3'- -UGCGGCGC--UCGGUUGUaucuCCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 53346 | 0.74 | 0.391476 |
Target: 5'- -gGCCGCGGGgCGGCGU-GAGGUCUUg -3' miRNA: 3'- ugCGGCGCUCgGUUGUAuCUCCGGAA- -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 54857 | 0.73 | 0.426022 |
Target: 5'- uGCGCCauccccagcaGCGGGCC---GUGGAGGCCUUa -3' miRNA: 3'- -UGCGG----------CGCUCGGuugUAUCUCCGGAA- -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 55765 | 0.73 | 0.434939 |
Target: 5'- -gGCgGCGGGCCAgggGCAgcGAGGCCa- -3' miRNA: 3'- ugCGgCGCUCGGU---UGUauCUCCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 116564 | 0.73 | 0.453089 |
Target: 5'- gACGuCCGCGuGCCccucauccACGUAGGGGCCa- -3' miRNA: 3'- -UGC-GGCGCuCGGu-------UGUAUCUCCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 115964 | 0.73 | 0.417216 |
Target: 5'- cGCcCCGCGGGCaGACGUcGAGGCCUa -3' miRNA: 3'- -UGcGGCGCUCGgUUGUAuCUCCGGAa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 75385 | 0.73 | 0.426022 |
Target: 5'- gGCGCCGCacccgacAGCUcccgGAUAUGGAGGCCUUc -3' miRNA: 3'- -UGCGGCGc------UCGG----UUGUAUCUCCGGAA- -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 167277 | 0.72 | 0.462318 |
Target: 5'- -gGCCGCGcguggggauGGCCGGCGggAGGGGCCg- -3' miRNA: 3'- ugCGGCGC---------UCGGUUGUa-UCUCCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 169141 | 0.72 | 0.462318 |
Target: 5'- -gGCCGCGcguggggauGGCCGGCGggAGGGGCCg- -3' miRNA: 3'- ugCGGCGC---------UCGGUUGUa-UCUCCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 13341 | 0.72 | 0.462318 |
Target: 5'- -gGCCGCG-GCCuACGcGGAGGCCa- -3' miRNA: 3'- ugCGGCGCuCGGuUGUaUCUCCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 170073 | 0.72 | 0.462318 |
Target: 5'- -gGCCGCGcguggggauGGCCGGCGggAGGGGCCg- -3' miRNA: 3'- ugCGGCGC---------UCGGUUGUa-UCUCCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 20885 | 0.72 | 0.509856 |
Target: 5'- gAUGCUggaGCGGGCCAAggccuuCGUGGAGGCCc- -3' miRNA: 3'- -UGCGG---CGCUCGGUU------GUAUCUCCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 99367 | 0.72 | 0.471645 |
Target: 5'- gGCGCC-CGGGCCGcGCGUuGAGGCCc- -3' miRNA: 3'- -UGCGGcGCUCGGU-UGUAuCUCCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 168209 | 0.72 | 0.462318 |
Target: 5'- -gGCCGCGcguggggauGGCCGGCGggAGGGGCCg- -3' miRNA: 3'- ugCGGCGC---------UCGGUUGUa-UCUCCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 117882 | 0.71 | 0.539342 |
Target: 5'- -gGCCGCG-GCCAGCcgcguGAGGCCc- -3' miRNA: 3'- ugCGGCGCuCGGUUGuau--CUCCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 129222 | 0.71 | 0.519614 |
Target: 5'- aGCGCUGaaaGAGCCAGCAgGGAcgGGCCc- -3' miRNA: 3'- -UGCGGCg--CUCGGUUGUaUCU--CCGGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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