miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28839 5' -57.7 NC_006146.1 + 65125 1.04 0.003816
Target:  5'- cACGCCGCGAGCCAACAUAGAGGCCUUc -3'
miRNA:   3'- -UGCGGCGCUCGGUUGUAUCUCCGGAA- -5'
28839 5' -57.7 NC_006146.1 + 75659 0.78 0.236161
Target:  5'- gACGCCGCGGGUCAGCAgucauGGCCg- -3'
miRNA:   3'- -UGCGGCGCUCGGUUGUaucu-CCGGaa -5'
28839 5' -57.7 NC_006146.1 + 115118 0.75 0.328094
Target:  5'- -aGUCGCuGGCCAGCGUGGuGGCCUc -3'
miRNA:   3'- ugCGGCGcUCGGUUGUAUCuCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 42639 0.75 0.328094
Target:  5'- cCGCCGUGGGCCucACGUAGuGGGCCc- -3'
miRNA:   3'- uGCGGCGCUCGGu-UGUAUC-UCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 53346 0.74 0.391476
Target:  5'- -gGCCGCGGGgCGGCGU-GAGGUCUUg -3'
miRNA:   3'- ugCGGCGCUCgGUUGUAuCUCCGGAA- -5'
28839 5' -57.7 NC_006146.1 + 59886 0.74 0.408521
Target:  5'- cACGCCGCGcgGGCCAGCAcgcuGGCCa- -3'
miRNA:   3'- -UGCGGCGC--UCGGUUGUaucuCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 115964 0.73 0.417216
Target:  5'- cGCcCCGCGGGCaGACGUcGAGGCCUa -3'
miRNA:   3'- -UGcGGCGCUCGgUUGUAuCUCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 75385 0.73 0.426022
Target:  5'- gGCGCCGCacccgacAGCUcccgGAUAUGGAGGCCUUc -3'
miRNA:   3'- -UGCGGCGc------UCGG----UUGUAUCUCCGGAA- -5'
28839 5' -57.7 NC_006146.1 + 54857 0.73 0.426022
Target:  5'- uGCGCCauccccagcaGCGGGCC---GUGGAGGCCUUa -3'
miRNA:   3'- -UGCGG----------CGCUCGGuugUAUCUCCGGAA- -5'
28839 5' -57.7 NC_006146.1 + 55765 0.73 0.434939
Target:  5'- -gGCgGCGGGCCAgggGCAgcGAGGCCa- -3'
miRNA:   3'- ugCGgCGCUCGGU---UGUauCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 116564 0.73 0.453089
Target:  5'- gACGuCCGCGuGCCccucauccACGUAGGGGCCa- -3'
miRNA:   3'- -UGC-GGCGCuCGGu-------UGUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 167277 0.72 0.462318
Target:  5'- -gGCCGCGcguggggauGGCCGGCGggAGGGGCCg- -3'
miRNA:   3'- ugCGGCGC---------UCGGUUGUa-UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 169141 0.72 0.462318
Target:  5'- -gGCCGCGcguggggauGGCCGGCGggAGGGGCCg- -3'
miRNA:   3'- ugCGGCGC---------UCGGUUGUa-UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 13341 0.72 0.462318
Target:  5'- -gGCCGCG-GCCuACGcGGAGGCCa- -3'
miRNA:   3'- ugCGGCGCuCGGuUGUaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 170073 0.72 0.462318
Target:  5'- -gGCCGCGcguggggauGGCCGGCGggAGGGGCCg- -3'
miRNA:   3'- ugCGGCGC---------UCGGUUGUa-UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 168209 0.72 0.462318
Target:  5'- -gGCCGCGcguggggauGGCCGGCGggAGGGGCCg- -3'
miRNA:   3'- ugCGGCGC---------UCGGUUGUa-UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 99367 0.72 0.471645
Target:  5'- gGCGCC-CGGGCCGcGCGUuGAGGCCc- -3'
miRNA:   3'- -UGCGGcGCUCGGU-UGUAuCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 20885 0.72 0.509856
Target:  5'- gAUGCUggaGCGGGCCAAggccuuCGUGGAGGCCc- -3'
miRNA:   3'- -UGCGG---CGCUCGGUU------GUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 129222 0.71 0.519614
Target:  5'- aGCGCUGaaaGAGCCAGCAgGGAcgGGCCc- -3'
miRNA:   3'- -UGCGGCg--CUCGGUUGUaUCU--CCGGaa -5'
28839 5' -57.7 NC_006146.1 + 117882 0.71 0.539342
Target:  5'- -gGCCGCG-GCCAGCcgcguGAGGCCc- -3'
miRNA:   3'- ugCGGCGCuCGGUUGuau--CUCCGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.