miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28839 5' -57.7 NC_006146.1 + 43699 0.71 0.549302
Target:  5'- gACGCgGCGAGCCugggcgAGCGU-GAGGCUa- -3'
miRNA:   3'- -UGCGgCGCUCGG------UUGUAuCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 21953 0.71 0.56636
Target:  5'- cGCGCCauuggggccagcaaGCGAGaCCAGCccAGAGGCCc- -3'
miRNA:   3'- -UGCGG--------------CGCUC-GGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 146831 0.71 0.569385
Target:  5'- -gGCCGC--GCCAGCGUAGAgcccgGGCCUg -3'
miRNA:   3'- ugCGGCGcuCGGUUGUAUCU-----CCGGAa -5'
28839 5' -57.7 NC_006146.1 + 45407 0.7 0.589644
Target:  5'- cACGUCgGUGGGCCAGCGc-GAGGCCc- -3'
miRNA:   3'- -UGCGG-CGCUCGGUUGUauCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 124200 0.7 0.596767
Target:  5'- cCGCCGCGgccgacucuuacugGGacuccugguCCGACGUGGAGGCCa- -3'
miRNA:   3'- uGCGGCGC--------------UC---------GGUUGUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 40052 0.7 0.599824
Target:  5'- gACGCUGUGAGCCAuggcACAUGuGGGCg-- -3'
miRNA:   3'- -UGCGGCGCUCGGU----UGUAUcUCCGgaa -5'
28839 5' -57.7 NC_006146.1 + 125734 0.7 0.620247
Target:  5'- aGCGCCGCc-GCCGAUcc-GAGGCCUc -3'
miRNA:   3'- -UGCGGCGcuCGGUUGuauCUCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 23764 0.7 0.620247
Target:  5'- cUGCCGCG-GCCGAgaAUGGcGGCCUg -3'
miRNA:   3'- uGCGGCGCuCGGUUg-UAUCuCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 18992 0.7 0.630476
Target:  5'- -gGCCG-GAGCCAGaccccaGUGGGGGCCc- -3'
miRNA:   3'- ugCGGCgCUCGGUUg-----UAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 68438 0.69 0.640706
Target:  5'- aACGCCGCG-GCCGGCuccUGGAaaGCCUa -3'
miRNA:   3'- -UGCGGCGCuCGGUUGu--AUCUc-CGGAa -5'
28839 5' -57.7 NC_006146.1 + 121478 0.69 0.661138
Target:  5'- aACGCCGgGu-CCAuCGUGGGGGCCg- -3'
miRNA:   3'- -UGCGGCgCucGGUuGUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 53517 0.69 0.671323
Target:  5'- -gGCUGCGGGCCGcGCGUGuGAaGGCCg- -3'
miRNA:   3'- ugCGGCGCUCGGU-UGUAU-CU-CCGGaa -5'
28839 5' -57.7 NC_006146.1 + 56222 0.68 0.701652
Target:  5'- -aGCCGCGAGCCGuccagcggguccGCGggggcGGAGGCg-- -3'
miRNA:   3'- ugCGGCGCUCGGU------------UGUa----UCUCCGgaa -5'
28839 5' -57.7 NC_006146.1 + 51965 0.68 0.710659
Target:  5'- gGCGCCGaCGGGgaggucuCCGGCAUGcGGGCCg- -3'
miRNA:   3'- -UGCGGC-GCUC-------GGUUGUAUcUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 10460 0.68 0.711657
Target:  5'- aGCGCCGCcu-UCGugAUGGGGGCCa- -3'
miRNA:   3'- -UGCGGCGcucGGUugUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 137880 0.68 0.711657
Target:  5'- cCGCCcCGGGCCGGCA-GGGGGUCc- -3'
miRNA:   3'- uGCGGcGCUCGGUUGUaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 58850 0.68 0.71862
Target:  5'- uGCGCCGUcaaGGCCGGCAgccccuucauccugUgaaGGAGGCCUg -3'
miRNA:   3'- -UGCGGCGc--UCGGUUGU--------------A---UCUCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 56331 0.68 0.721594
Target:  5'- uGCGCCGCGAGaa-----GGAGGCCg- -3'
miRNA:   3'- -UGCGGCGCUCgguuguaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 130528 0.68 0.731454
Target:  5'- cGCGCCGgGcGgCGACcaGGGGGCCUUc -3'
miRNA:   3'- -UGCGGCgCuCgGUUGuaUCUCCGGAA- -5'
28839 5' -57.7 NC_006146.1 + 42432 0.68 0.741229
Target:  5'- gACGCagcugggugCGCGccGCCAGCAUGGcGGCCg- -3'
miRNA:   3'- -UGCG---------GCGCu-CGGUUGUAUCuCCGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.