miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28839 5' -57.7 NC_006146.1 + 39024 0.66 0.814362
Target:  5'- gUGUCGCaacccaaacauggGGGCCAGCAggcAGGGGCCc- -3'
miRNA:   3'- uGCGGCG-------------CUCGGUUGUa--UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 56131 0.66 0.806472
Target:  5'- -gGCCGCGGGCCccgaGACcgAGAgcaccuccccgcGGCCg- -3'
miRNA:   3'- ugCGGCGCUCGG----UUGuaUCU------------CCGGaa -5'
28839 5' -57.7 NC_006146.1 + 167571 0.66 0.806472
Target:  5'- gGC-CCGCGgagaGGCCGuguGUGGAGGCCg- -3'
miRNA:   3'- -UGcGGCGC----UCGGUug-UAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 168503 0.66 0.806472
Target:  5'- gGC-CCGCGgagaGGCCGuguGUGGAGGCCg- -3'
miRNA:   3'- -UGcGGCGC----UCGGUug-UAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 55478 0.66 0.806472
Target:  5'- -gGCCGCGGGCgAGaac-GAGGCCc- -3'
miRNA:   3'- ugCGGCGCUCGgUUguauCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 170366 0.66 0.806472
Target:  5'- gGC-CCGCGgagaGGCCGuguGUGGAGGCCg- -3'
miRNA:   3'- -UGcGGCGC----UCGGUug-UAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 169435 0.66 0.806472
Target:  5'- gGC-CCGCGgagaGGCCGuguGUGGAGGCCg- -3'
miRNA:   3'- -UGcGGCGC----UCGGUug-UAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 117709 0.66 0.806472
Target:  5'- cACGCCGCcccccaaGGCCGGgGccGAGGCCg- -3'
miRNA:   3'- -UGCGGCGc------UCGGUUgUauCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 40280 0.66 0.806472
Target:  5'- gGCGCgggcggagGCGGGCCAA---AGAGGCCg- -3'
miRNA:   3'- -UGCGg-------CGCUCGGUUguaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 90148 0.66 0.806472
Target:  5'- -gGCaGCGgagcaggaggcAGCCGAgGUAGAGGCCg- -3'
miRNA:   3'- ugCGgCGC-----------UCGGUUgUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 60468 0.67 0.797555
Target:  5'- -gGCCGCGGGg-AGCGgugAGAGGCCg- -3'
miRNA:   3'- ugCGGCGCUCggUUGUa--UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 128181 0.67 0.797555
Target:  5'- gACGCCGgGAGgCGGCccagGGGGGCg-- -3'
miRNA:   3'- -UGCGGCgCUCgGUUGua--UCUCCGgaa -5'
28839 5' -57.7 NC_006146.1 + 15809 0.67 0.788489
Target:  5'- -gGCCagcaaGCGAGaCCAGCccAGAGGCCc- -3'
miRNA:   3'- ugCGG-----CGCUC-GGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 12730 0.67 0.788489
Target:  5'- -gGCCagcaaGCGAGaCCAGCccAGAGGCCc- -3'
miRNA:   3'- ugCGG-----CGCUC-GGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 28120 0.67 0.788489
Target:  5'- -gGCCagcaaGCGAGaCCAGCccAGAGGCCc- -3'
miRNA:   3'- ugCGG-----CGCUC-GGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 25042 0.67 0.788489
Target:  5'- -gGCCagcaaGCGAGaCCAGCccAGAGGCCc- -3'
miRNA:   3'- ugCGG-----CGCUC-GGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 83754 0.67 0.788489
Target:  5'- -gGCCGUGAGCa---GUGGGuGGCCUg -3'
miRNA:   3'- ugCGGCGCUCGguugUAUCU-CCGGAa -5'
28839 5' -57.7 NC_006146.1 + 124463 0.67 0.788489
Target:  5'- uACGCCGCc-GCCuuCcUGGGGGCCc- -3'
miRNA:   3'- -UGCGGCGcuCGGuuGuAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 18887 0.67 0.788489
Target:  5'- -gGCCagcaaGCGAGaCCAGCccAGAGGCCc- -3'
miRNA:   3'- ugCGG-----CGCUC-GGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 145267 0.67 0.787575
Target:  5'- aGCGCCGUgaucuugGAGCUGAg--GGGGGCCUc -3'
miRNA:   3'- -UGCGGCG-------CUCGGUUguaUCUCCGGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.