miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28839 5' -57.7 NC_006146.1 + 10460 0.68 0.711657
Target:  5'- aGCGCCGCcu-UCGugAUGGGGGCCa- -3'
miRNA:   3'- -UGCGGCGcucGGUugUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 12730 0.67 0.788489
Target:  5'- -gGCCagcaaGCGAGaCCAGCccAGAGGCCc- -3'
miRNA:   3'- ugCGG-----CGCUC-GGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 13341 0.72 0.462318
Target:  5'- -gGCCGCG-GCCuACGcGGAGGCCa- -3'
miRNA:   3'- ugCGGCGCuCGGuUGUaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 15809 0.67 0.788489
Target:  5'- -gGCCagcaaGCGAGaCCAGCccAGAGGCCc- -3'
miRNA:   3'- ugCGG-----CGCUC-GGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 18887 0.67 0.788489
Target:  5'- -gGCCagcaaGCGAGaCCAGCccAGAGGCCc- -3'
miRNA:   3'- ugCGG-----CGCUC-GGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 18992 0.7 0.630476
Target:  5'- -gGCCG-GAGCCAGaccccaGUGGGGGCCc- -3'
miRNA:   3'- ugCGGCgCUCGGUUg-----UAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 20885 0.72 0.509856
Target:  5'- gAUGCUggaGCGGGCCAAggccuuCGUGGAGGCCc- -3'
miRNA:   3'- -UGCGG---CGCUCGGUU------GUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 21953 0.71 0.56636
Target:  5'- cGCGCCauuggggccagcaaGCGAGaCCAGCccAGAGGCCc- -3'
miRNA:   3'- -UGCGG--------------CGCUC-GGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 23764 0.7 0.620247
Target:  5'- cUGCCGCG-GCCGAgaAUGGcGGCCUg -3'
miRNA:   3'- uGCGGCGCuCGGUUg-UAUCuCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 25042 0.67 0.788489
Target:  5'- -gGCCagcaaGCGAGaCCAGCccAGAGGCCc- -3'
miRNA:   3'- ugCGG-----CGCUC-GGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 28120 0.67 0.788489
Target:  5'- -gGCCagcaaGCGAGaCCAGCccAGAGGCCc- -3'
miRNA:   3'- ugCGG-----CGCUC-GGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 31834 0.66 0.840479
Target:  5'- cGCGCCaccaGGGCCcgUAUGGuGGCCg- -3'
miRNA:   3'- -UGCGGcg--CUCGGuuGUAUCuCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 39024 0.66 0.814362
Target:  5'- gUGUCGCaacccaaacauggGGGCCAGCAggcAGGGGCCc- -3'
miRNA:   3'- uGCGGCG-------------CUCGGUUGUa--UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 40052 0.7 0.599824
Target:  5'- gACGCUGUGAGCCAuggcACAUGuGGGCg-- -3'
miRNA:   3'- -UGCGGCGCUCGGU----UGUAUcUCCGgaa -5'
28839 5' -57.7 NC_006146.1 + 40280 0.66 0.806472
Target:  5'- gGCGCgggcggagGCGGGCCAA---AGAGGCCg- -3'
miRNA:   3'- -UGCGg-------CGCUCGGUUguaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 42432 0.68 0.741229
Target:  5'- gACGCagcugggugCGCGccGCCAGCAUGGcGGCCg- -3'
miRNA:   3'- -UGCG---------GCGCu-CGGUUGUAUCuCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 42639 0.75 0.328094
Target:  5'- cCGCCGUGGGCCucACGUAGuGGGCCc- -3'
miRNA:   3'- uGCGGCGCUCGGu-UGUAUC-UCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 42890 0.68 0.741229
Target:  5'- aACuuUGCGGGCCGACGcUAG-GGCCUc -3'
miRNA:   3'- -UGcgGCGCUCGGUUGU-AUCuCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 43699 0.71 0.549302
Target:  5'- gACGCgGCGAGCCugggcgAGCGU-GAGGCUa- -3'
miRNA:   3'- -UGCGgCGCUCGG------UUGUAuCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 45130 0.66 0.828896
Target:  5'- cCGCCGgGAGCCuugggcuuuGCGggcugggugggacGGAGGCCUc -3'
miRNA:   3'- uGCGGCgCUCGGu--------UGUa------------UCUCCGGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.