miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28839 5' -57.7 NC_006146.1 + 45407 0.7 0.589644
Target:  5'- cACGUCgGUGGGCCAGCGc-GAGGCCc- -3'
miRNA:   3'- -UGCGG-CGCUCGGUUGUauCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 46717 0.66 0.848526
Target:  5'- -gGCCGCGgcGGCUccgaGGCGggcGGAGGCCa- -3'
miRNA:   3'- ugCGGCGC--UCGG----UUGUa--UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 47244 0.67 0.779283
Target:  5'- cUGgCGCGGGUCGACGUGGccccuGGCCc- -3'
miRNA:   3'- uGCgGCGCUCGGUUGUAUCu----CCGGaa -5'
28839 5' -57.7 NC_006146.1 + 47264 0.67 0.757622
Target:  5'- cACGCCGUGAGCgAgaccggcgacggcuGCGUGGAccuccgcuggcuGGCCa- -3'
miRNA:   3'- -UGCGGCGCUCGgU--------------UGUAUCU------------CCGGaa -5'
28839 5' -57.7 NC_006146.1 + 47510 0.67 0.769944
Target:  5'- cCGCCGCGgccaguuccAGCCAGguUGcGGGGCCc- -3'
miRNA:   3'- uGCGGCGC---------UCGGUUguAU-CUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 51574 0.66 0.832242
Target:  5'- gGCGCCGCcgggagGGGCCcgggggAGCcagAGGGGCCa- -3'
miRNA:   3'- -UGCGGCG------CUCGG------UUGua-UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 51965 0.68 0.710659
Target:  5'- gGCGCCGaCGGGgaggucuCCGGCAUGcGGGCCg- -3'
miRNA:   3'- -UGCGGC-GCUC-------GGUUGUAUcUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 52092 0.66 0.848526
Target:  5'- -gGUCGgGGGCCGGC---GAGGCCa- -3'
miRNA:   3'- ugCGGCgCUCGGUUGuauCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 53346 0.74 0.391476
Target:  5'- -gGCCGCGGGgCGGCGU-GAGGUCUUg -3'
miRNA:   3'- ugCGGCGCUCgGUUGUAuCUCCGGAA- -5'
28839 5' -57.7 NC_006146.1 + 53517 0.69 0.671323
Target:  5'- -gGCUGCGGGCCGcGCGUGuGAaGGCCg- -3'
miRNA:   3'- ugCGGCGCUCGGU-UGUAU-CU-CCGGaa -5'
28839 5' -57.7 NC_006146.1 + 54857 0.73 0.426022
Target:  5'- uGCGCCauccccagcaGCGGGCC---GUGGAGGCCUUa -3'
miRNA:   3'- -UGCGG----------CGCUCGGuugUAUCUCCGGAA- -5'
28839 5' -57.7 NC_006146.1 + 55478 0.66 0.806472
Target:  5'- -gGCCGCGGGCgAGaac-GAGGCCc- -3'
miRNA:   3'- ugCGGCGCUCGgUUguauCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 55546 0.66 0.848526
Target:  5'- cCGCCGCcacGCCGGCcaGGAaGGCCUc -3'
miRNA:   3'- uGCGGCGcu-CGGUUGuaUCU-CCGGAa -5'
28839 5' -57.7 NC_006146.1 + 55765 0.73 0.434939
Target:  5'- -gGCgGCGGGCCAgggGCAgcGAGGCCa- -3'
miRNA:   3'- ugCGgCGCUCGGU---UGUauCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 56131 0.66 0.806472
Target:  5'- -gGCCGCGGGCCccgaGACcgAGAgcaccuccccgcGGCCg- -3'
miRNA:   3'- ugCGGCGCUCGG----UUGuaUCU------------CCGGaa -5'
28839 5' -57.7 NC_006146.1 + 56222 0.68 0.701652
Target:  5'- -aGCCGCGAGCCGuccagcggguccGCGggggcGGAGGCg-- -3'
miRNA:   3'- ugCGGCGCUCGGU------------UGUa----UCUCCGgaa -5'
28839 5' -57.7 NC_006146.1 + 56331 0.68 0.721594
Target:  5'- uGCGCCGCGAGaa-----GGAGGCCg- -3'
miRNA:   3'- -UGCGGCGCUCgguuguaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 57924 0.67 0.760483
Target:  5'- cGCGCacgGUG-GCCGaguACAUGGAGGUCUUc -3'
miRNA:   3'- -UGCGg--CGCuCGGU---UGUAUCUCCGGAA- -5'
28839 5' -57.7 NC_006146.1 + 58539 0.67 0.750908
Target:  5'- -aGCgGCcGGUCAGCGUGGcGGCCUa -3'
miRNA:   3'- ugCGgCGcUCGGUUGUAUCuCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 58850 0.68 0.71862
Target:  5'- uGCGCCGUcaaGGCCGGCAgccccuucauccugUgaaGGAGGCCUg -3'
miRNA:   3'- -UGCGGCGc--UCGGUUGU--------------A---UCUCCGGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.