miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28839 5' -57.7 NC_006146.1 + 59052 0.68 0.745112
Target:  5'- gGCGCaGCGGGCCGACAcgcagGGcgacgagcucuugcuGGGCCUc -3'
miRNA:   3'- -UGCGgCGCUCGGUUGUa----UC---------------UCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 59886 0.74 0.408521
Target:  5'- cACGCCGCGcgGGCCAGCAcgcuGGCCa- -3'
miRNA:   3'- -UGCGGCGC--UCGGUUGUaucuCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 60468 0.67 0.797555
Target:  5'- -gGCCGCGGGg-AGCGgugAGAGGCCg- -3'
miRNA:   3'- ugCGGCGCUCggUUGUa--UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 65125 1.04 0.003816
Target:  5'- cACGCCGCGAGCCAACAUAGAGGCCUUc -3'
miRNA:   3'- -UGCGGCGCUCGGUUGUAUCUCCGGAA- -5'
28839 5' -57.7 NC_006146.1 + 66527 0.66 0.823824
Target:  5'- cACGCCGCu-GUCaAACAgGGGGGCCc- -3'
miRNA:   3'- -UGCGGCGcuCGG-UUGUaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 68438 0.69 0.640706
Target:  5'- aACGCCGCG-GCCGGCuccUGGAaaGCCUa -3'
miRNA:   3'- -UGCGGCGCuCGGUUGu--AUCUc-CGGAa -5'
28839 5' -57.7 NC_006146.1 + 68564 0.66 0.823824
Target:  5'- cCGCUgGCGAGCCGAgAUcGAucugGGCCUg -3'
miRNA:   3'- uGCGG-CGCUCGGUUgUAuCU----CCGGAa -5'
28839 5' -57.7 NC_006146.1 + 68712 0.67 0.779283
Target:  5'- gACGCCGUccgcguccccgaGAGCUgucgcgggGugGUGGAGGCCc- -3'
miRNA:   3'- -UGCGGCG------------CUCGG--------UugUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 74745 0.67 0.750908
Target:  5'- gAC-CCaGUGAGCCAGCcuccgGGGGGCCa- -3'
miRNA:   3'- -UGcGG-CGCUCGGUUGua---UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 75385 0.73 0.426022
Target:  5'- gGCGCCGCacccgacAGCUcccgGAUAUGGAGGCCUUc -3'
miRNA:   3'- -UGCGGCGc------UCGG----UUGUAUCUCCGGAA- -5'
28839 5' -57.7 NC_006146.1 + 75659 0.78 0.236161
Target:  5'- gACGCCGCGGGUCAGCAgucauGGCCg- -3'
miRNA:   3'- -UGCGGCGCUCGGUUGUaucu-CCGGaa -5'
28839 5' -57.7 NC_006146.1 + 76726 0.67 0.760483
Target:  5'- cACGCU-CGAgGCCGACAgcuucgUGGAGGCCc- -3'
miRNA:   3'- -UGCGGcGCU-CGGUUGU------AUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 83754 0.67 0.788489
Target:  5'- -gGCCGUGAGCa---GUGGGuGGCCUg -3'
miRNA:   3'- ugCGGCGCUCGguugUAUCU-CCGGAa -5'
28839 5' -57.7 NC_006146.1 + 85912 0.66 0.848526
Target:  5'- -aGCCGCGGGgCuuuACccuGGGGCCUg -3'
miRNA:   3'- ugCGGCGCUCgGu--UGuauCUCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 90148 0.66 0.806472
Target:  5'- -gGCaGCGgagcaggaggcAGCCGAgGUAGAGGCCg- -3'
miRNA:   3'- ugCGgCGC-----------UCGGUUgUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 94613 0.66 0.840479
Target:  5'- -aGCCGCGuccAGCCcACGUAcuGGGCCg- -3'
miRNA:   3'- ugCGGCGC---UCGGuUGUAUc-UCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 94785 0.67 0.779283
Target:  5'- -aGuuGCGGGCCAcguccACGUAGgccAGGCCc- -3'
miRNA:   3'- ugCggCGCUCGGU-----UGUAUC---UCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 95036 0.66 0.832242
Target:  5'- cCGCCGacaaaugGAGCgaGACAUGGGGGCUc- -3'
miRNA:   3'- uGCGGCg------CUCGg-UUGUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 96431 0.67 0.769944
Target:  5'- aGCGCCGCucaaGGCCAucgugggcCAUGGGGGCa-- -3'
miRNA:   3'- -UGCGGCGc---UCGGUu-------GUAUCUCCGgaa -5'
28839 5' -57.7 NC_006146.1 + 99367 0.72 0.471645
Target:  5'- gGCGCC-CGGGCCGcGCGUuGAGGCCc- -3'
miRNA:   3'- -UGCGGcGCUCGGU-UGUAuCUCCGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.