miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28839 5' -57.7 NC_006146.1 + 170366 0.66 0.806472
Target:  5'- gGC-CCGCGgagaGGCCGuguGUGGAGGCCg- -3'
miRNA:   3'- -UGcGGCGC----UCGGUug-UAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 170156 0.67 0.750908
Target:  5'- cGCGCgGCGGcGCCGGCc-GGGGGCUg- -3'
miRNA:   3'- -UGCGgCGCU-CGGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 170073 0.72 0.462318
Target:  5'- -gGCCGCGcguggggauGGCCGGCGggAGGGGCCg- -3'
miRNA:   3'- ugCGGCGC---------UCGGUUGUa-UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 169435 0.66 0.806472
Target:  5'- gGC-CCGCGgagaGGCCGuguGUGGAGGCCg- -3'
miRNA:   3'- -UGcGGCGC----UCGGUug-UAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 169225 0.67 0.750908
Target:  5'- cGCGCgGCGGcGCCGGCc-GGGGGCUg- -3'
miRNA:   3'- -UGCGgCGCU-CGGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 169141 0.72 0.462318
Target:  5'- -gGCCGCGcguggggauGGCCGGCGggAGGGGCCg- -3'
miRNA:   3'- ugCGGCGC---------UCGGUUGUa-UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 168503 0.66 0.806472
Target:  5'- gGC-CCGCGgagaGGCCGuguGUGGAGGCCg- -3'
miRNA:   3'- -UGcGGCGC----UCGGUug-UAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 168293 0.67 0.750908
Target:  5'- cGCGCgGCGGcGCCGGCc-GGGGGCUg- -3'
miRNA:   3'- -UGCGgCGCU-CGGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 168209 0.72 0.462318
Target:  5'- -gGCCGCGcguggggauGGCCGGCGggAGGGGCCg- -3'
miRNA:   3'- ugCGGCGC---------UCGGUUGUa-UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 167571 0.66 0.806472
Target:  5'- gGC-CCGCGgagaGGCCGuguGUGGAGGCCg- -3'
miRNA:   3'- -UGcGGCGC----UCGGUug-UAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 167361 0.67 0.750908
Target:  5'- cGCGCgGCGGcGCCGGCc-GGGGGCUg- -3'
miRNA:   3'- -UGCGgCGCU-CGGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 167277 0.72 0.462318
Target:  5'- -gGCCGCGcguggggauGGCCGGCGggAGGGGCCg- -3'
miRNA:   3'- ugCGGCGC---------UCGGUUGUa-UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 159349 0.66 0.823824
Target:  5'- uGCGCCGCcu-CCAGCAUggcGGGGGCgUa -3'
miRNA:   3'- -UGCGGCGcucGGUUGUA---UCUCCGgAa -5'
28839 5' -57.7 NC_006146.1 + 158952 0.66 0.832242
Target:  5'- gGCGuaGCGGGCCAGgaaGUugggagaagaaGGAGGCCg- -3'
miRNA:   3'- -UGCggCGCUCGGUUg--UA-----------UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 157860 0.66 0.840479
Target:  5'- aGCGCCGCcuggaaaaguuGuGCCAcAgGUAGAGGCUc- -3'
miRNA:   3'- -UGCGGCG-----------CuCGGU-UgUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 155779 0.66 0.831408
Target:  5'- cCGCCGCagaaGAGCCGcucggugGCccUGGGGGCCa- -3'
miRNA:   3'- uGCGGCG----CUCGGU-------UGu-AUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 146831 0.71 0.569385
Target:  5'- -gGCCGC--GCCAGCGUAGAgcccgGGCCUg -3'
miRNA:   3'- ugCGGCGcuCGGUUGUAUCU-----CCGGAa -5'
28839 5' -57.7 NC_006146.1 + 145267 0.67 0.787575
Target:  5'- aGCGCCGUgaucuugGAGCUGAg--GGGGGCCUc -3'
miRNA:   3'- -UGCGGCG-------CUCGGUUguaUCUCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 137880 0.68 0.711657
Target:  5'- cCGCCcCGGGCCGGCA-GGGGGUCc- -3'
miRNA:   3'- uGCGGcGCUCGGUUGUaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 130528 0.68 0.731454
Target:  5'- cGCGCCGgGcGgCGACcaGGGGGCCUUc -3'
miRNA:   3'- -UGCGGCgCuCgGUUGuaUCUCCGGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.