miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28839 5' -57.7 NC_006146.1 + 129222 0.71 0.519614
Target:  5'- aGCGCUGaaaGAGCCAGCAgGGAcgGGCCc- -3'
miRNA:   3'- -UGCGGCg--CUCGGUUGUaUCU--CCGGaa -5'
28839 5' -57.7 NC_006146.1 + 128181 0.67 0.797555
Target:  5'- gACGCCGgGAGgCGGCccagGGGGGCg-- -3'
miRNA:   3'- -UGCGGCgCUCgGUUGua--UCUCCGgaa -5'
28839 5' -57.7 NC_006146.1 + 127414 0.66 0.814363
Target:  5'- cCGCCGCcgGAGCCggUGUcaacggccgccgaGGAGGCUg- -3'
miRNA:   3'- uGCGGCG--CUCGGuuGUA-------------UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 126419 0.66 0.848526
Target:  5'- -gGUCGCGAGCaCGGCAc--AGGCCa- -3'
miRNA:   3'- ugCGGCGCUCG-GUUGUaucUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 125734 0.7 0.620247
Target:  5'- aGCGCCGCc-GCCGAUcc-GAGGCCUc -3'
miRNA:   3'- -UGCGGCGcuCGGUUGuauCUCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 124463 0.67 0.788489
Target:  5'- uACGCCGCc-GCCuuCcUGGGGGCCc- -3'
miRNA:   3'- -UGCGGCGcuCGGuuGuAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 124200 0.7 0.596767
Target:  5'- cCGCCGCGgccgacucuuacugGGacuccugguCCGACGUGGAGGCCa- -3'
miRNA:   3'- uGCGGCGC--------------UC---------GGUUGUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 123886 0.68 0.741229
Target:  5'- gGCGcCCGCGAGuCCGACc---GGGCCg- -3'
miRNA:   3'- -UGC-GGCGCUC-GGUUGuaucUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 121478 0.69 0.661138
Target:  5'- aACGCCGgGu-CCAuCGUGGGGGCCg- -3'
miRNA:   3'- -UGCGGCgCucGGUuGUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 121417 0.67 0.779283
Target:  5'- cACGCCGCcccuGGCCGACAccGcGGCCc- -3'
miRNA:   3'- -UGCGGCGc---UCGGUUGUauCuCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 117882 0.71 0.539342
Target:  5'- -gGCCGCG-GCCAGCcgcguGAGGCCc- -3'
miRNA:   3'- ugCGGCGCuCGGUUGuau--CUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 117709 0.66 0.806472
Target:  5'- cACGCCGCcccccaaGGCCGGgGccGAGGCCg- -3'
miRNA:   3'- -UGCGGCGc------UCGGUUgUauCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 116564 0.73 0.453089
Target:  5'- gACGuCCGCGuGCCccucauccACGUAGGGGCCa- -3'
miRNA:   3'- -UGC-GGCGCuCGGu-------UGUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 115964 0.73 0.417216
Target:  5'- cGCcCCGCGGGCaGACGUcGAGGCCUa -3'
miRNA:   3'- -UGcGGCGCUCGgUUGUAuCUCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 115118 0.75 0.328094
Target:  5'- -aGUCGCuGGCCAGCGUGGuGGCCUc -3'
miRNA:   3'- ugCGGCGcUCGGUUGUAUCuCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 114120 0.66 0.848526
Target:  5'- cCGCCGCGcucaCCGA---GGAGGCCUg -3'
miRNA:   3'- uGCGGCGCuc--GGUUguaUCUCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 110995 0.67 0.779283
Target:  5'- -aGCCGCGcaccagcagguuGGCCAGCGUGcuGGCCc- -3'
miRNA:   3'- ugCGGCGC------------UCGGUUGUAUcuCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 108894 0.66 0.824673
Target:  5'- aGCGCCGCG-GCCAGCGagucagcagcgaccgAGcaggugacguGGGCCUc -3'
miRNA:   3'- -UGCGGCGCuCGGUUGUa--------------UC----------UCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 103748 0.66 0.840479
Target:  5'- gACGCCGCGcucaggagcGGCCAGCGgcucccGGUCUUc -3'
miRNA:   3'- -UGCGGCGC---------UCGGUUGUaucu--CCGGAA- -5'
28839 5' -57.7 NC_006146.1 + 99367 0.72 0.471645
Target:  5'- gGCGCC-CGGGCCGcGCGUuGAGGCCc- -3'
miRNA:   3'- -UGCGGcGCUCGGU-UGUAuCUCCGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.