miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28839 5' -57.7 NC_006146.1 + 53346 0.74 0.391476
Target:  5'- -gGCCGCGGGgCGGCGU-GAGGUCUUg -3'
miRNA:   3'- ugCGGCGCUCgGUUGUAuCUCCGGAA- -5'
28839 5' -57.7 NC_006146.1 + 137880 0.68 0.711657
Target:  5'- cCGCCcCGGGCCGGCA-GGGGGUCc- -3'
miRNA:   3'- uGCGGcGCUCGGUUGUaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 56331 0.68 0.721594
Target:  5'- uGCGCCGCGAGaa-----GGAGGCCg- -3'
miRNA:   3'- -UGCGGCGCUCgguuguaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 55546 0.66 0.848526
Target:  5'- cCGCCGCcacGCCGGCcaGGAaGGCCUc -3'
miRNA:   3'- uGCGGCGcu-CGGUUGuaUCU-CCGGAa -5'
28839 5' -57.7 NC_006146.1 + 167277 0.72 0.462318
Target:  5'- -gGCCGCGcguggggauGGCCGGCGggAGGGGCCg- -3'
miRNA:   3'- ugCGGCGC---------UCGGUUGUa-UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 168209 0.72 0.462318
Target:  5'- -gGCCGCGcguggggauGGCCGGCGggAGGGGCCg- -3'
miRNA:   3'- ugCGGCGC---------UCGGUUGUa-UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 170073 0.72 0.462318
Target:  5'- -gGCCGCGcguggggauGGCCGGCGggAGGGGCCg- -3'
miRNA:   3'- ugCGGCGC---------UCGGUUGUa-UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 99367 0.72 0.471645
Target:  5'- gGCGCC-CGGGCCGcGCGUuGAGGCCc- -3'
miRNA:   3'- -UGCGGcGCUCGGU-UGUAuCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 146831 0.71 0.569385
Target:  5'- -gGCCGC--GCCAGCGUAGAgcccgGGCCUg -3'
miRNA:   3'- ugCGGCGcuCGGUUGUAUCU-----CCGGAa -5'
28839 5' -57.7 NC_006146.1 + 51965 0.68 0.710659
Target:  5'- gGCGCCGaCGGGgaggucuCCGGCAUGcGGGCCg- -3'
miRNA:   3'- -UGCGGC-GCUC-------GGUUGUAUcUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 40052 0.7 0.599824
Target:  5'- gACGCUGUGAGCCAuggcACAUGuGGGCg-- -3'
miRNA:   3'- -UGCGGCGCUCGGU----UGUAUcUCCGgaa -5'
28839 5' -57.7 NC_006146.1 + 21953 0.71 0.56636
Target:  5'- cGCGCCauuggggccagcaaGCGAGaCCAGCccAGAGGCCc- -3'
miRNA:   3'- -UGCGG--------------CGCUC-GGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 59886 0.74 0.408521
Target:  5'- cACGCCGCGcgGGCCAGCAcgcuGGCCa- -3'
miRNA:   3'- -UGCGGCGC--UCGGUUGUaucuCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 53517 0.69 0.671323
Target:  5'- -gGCUGCGGGCCGcGCGUGuGAaGGCCg- -3'
miRNA:   3'- ugCGGCGCUCGGU-UGUAU-CU-CCGGaa -5'
28839 5' -57.7 NC_006146.1 + 55765 0.73 0.434939
Target:  5'- -gGCgGCGGGCCAgggGCAgcGAGGCCa- -3'
miRNA:   3'- ugCGgCGCUCGGU---UGUauCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 43699 0.71 0.549302
Target:  5'- gACGCgGCGAGCCugggcgAGCGU-GAGGCUa- -3'
miRNA:   3'- -UGCGgCGCUCGG------UUGUAuCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 56222 0.68 0.701652
Target:  5'- -aGCCGCGAGCCGuccagcggguccGCGggggcGGAGGCg-- -3'
miRNA:   3'- ugCGGCGCUCGGU------------UGUa----UCUCCGgaa -5'
28839 5' -57.7 NC_006146.1 + 58850 0.68 0.71862
Target:  5'- uGCGCCGUcaaGGCCGGCAgccccuucauccugUgaaGGAGGCCUg -3'
miRNA:   3'- -UGCGGCGc--UCGGUUGU--------------A---UCUCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 116564 0.73 0.453089
Target:  5'- gACGuCCGCGuGCCccucauccACGUAGGGGCCa- -3'
miRNA:   3'- -UGC-GGCGCuCGGu-------UGUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 169141 0.72 0.462318
Target:  5'- -gGCCGCGcguggggauGGCCGGCGggAGGGGCCg- -3'
miRNA:   3'- ugCGGCGC---------UCGGUUGUa-UCUCCGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.