miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28839 5' -57.7 NC_006146.1 + 59052 0.68 0.745112
Target:  5'- gGCGCaGCGGGCCGACAcgcagGGcgacgagcucuugcuGGGCCUc -3'
miRNA:   3'- -UGCGgCGCUCGGUUGUa----UC---------------UCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 42890 0.68 0.741229
Target:  5'- aACuuUGCGGGCCGACGcUAG-GGCCUc -3'
miRNA:   3'- -UGcgGCGCUCGGUUGU-AUCuCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 56222 0.68 0.701652
Target:  5'- -aGCCGCGAGCCGuccagcggguccGCGggggcGGAGGCg-- -3'
miRNA:   3'- ugCGGCGCUCGGU------------UGUa----UCUCCGgaa -5'
28839 5' -57.7 NC_006146.1 + 99367 0.72 0.471645
Target:  5'- gGCGCC-CGGGCCGcGCGUuGAGGCCc- -3'
miRNA:   3'- -UGCGGcGCUCGGU-UGUAuCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 94785 0.67 0.779283
Target:  5'- -aGuuGCGGGCCAcguccACGUAGgccAGGCCc- -3'
miRNA:   3'- ugCggCGCUCGGU-----UGUAUC---UCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 169225 0.67 0.750908
Target:  5'- cGCGCgGCGGcGCCGGCc-GGGGGCUg- -3'
miRNA:   3'- -UGCGgCGCU-CGGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 56331 0.68 0.721594
Target:  5'- uGCGCCGCGAGaa-----GGAGGCCg- -3'
miRNA:   3'- -UGCGGCGCUCgguuguaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 170073 0.72 0.462318
Target:  5'- -gGCCGCGcguggggauGGCCGGCGggAGGGGCCg- -3'
miRNA:   3'- ugCGGCGC---------UCGGUUGUa-UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 168293 0.67 0.750908
Target:  5'- cGCGCgGCGGcGCCGGCc-GGGGGCUg- -3'
miRNA:   3'- -UGCGgCGCU-CGGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 169141 0.72 0.462318
Target:  5'- -gGCCGCGcguggggauGGCCGGCGggAGGGGCCg- -3'
miRNA:   3'- ugCGGCGC---------UCGGUUGUa-UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 130528 0.68 0.731454
Target:  5'- cGCGCCGgGcGgCGACcaGGGGGCCUUc -3'
miRNA:   3'- -UGCGGCgCuCgGUUGuaUCUCCGGAA- -5'
28839 5' -57.7 NC_006146.1 + 58539 0.67 0.750908
Target:  5'- -aGCgGCcGGUCAGCGUGGcGGCCUa -3'
miRNA:   3'- ugCGgCGcUCGGUUGUAUCuCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 58850 0.68 0.71862
Target:  5'- uGCGCCGUcaaGGCCGGCAgccccuucauccugUgaaGGAGGCCUg -3'
miRNA:   3'- -UGCGGCGc--UCGGUUGU--------------A---UCUCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 51965 0.68 0.710659
Target:  5'- gGCGCCGaCGGGgaggucuCCGGCAUGcGGGCCg- -3'
miRNA:   3'- -UGCGGC-GCUC-------GGUUGUAUcUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 45407 0.7 0.589644
Target:  5'- cACGUCgGUGGGCCAGCGc-GAGGCCc- -3'
miRNA:   3'- -UGCGG-CGCUCGGUUGUauCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 43699 0.71 0.549302
Target:  5'- gACGCgGCGAGCCugggcgAGCGU-GAGGCUa- -3'
miRNA:   3'- -UGCGgCGCUCGG------UUGUAuCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 18887 0.67 0.788489
Target:  5'- -gGCCagcaaGCGAGaCCAGCccAGAGGCCc- -3'
miRNA:   3'- ugCGG-----CGCUC-GGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 145267 0.67 0.787575
Target:  5'- aGCGCCGUgaucuugGAGCUGAg--GGGGGCCUc -3'
miRNA:   3'- -UGCGGCG-------CUCGGUUguaUCUCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 47510 0.67 0.769944
Target:  5'- cCGCCGCGgccaguuccAGCCAGguUGcGGGGCCc- -3'
miRNA:   3'- uGCGGCGC---------UCGGUUguAU-CUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 170156 0.67 0.750908
Target:  5'- cGCGCgGCGGcGCCGGCc-GGGGGCUg- -3'
miRNA:   3'- -UGCGgCGCU-CGGUUGuaUCUCCGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.