miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28839 5' -57.7 NC_006146.1 + 169435 0.66 0.806472
Target:  5'- gGC-CCGCGgagaGGCCGuguGUGGAGGCCg- -3'
miRNA:   3'- -UGcGGCGC----UCGGUug-UAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 25042 0.67 0.788489
Target:  5'- -gGCCagcaaGCGAGaCCAGCccAGAGGCCc- -3'
miRNA:   3'- ugCGG-----CGCUC-GGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 169225 0.67 0.750908
Target:  5'- cGCGCgGCGGcGCCGGCc-GGGGGCUg- -3'
miRNA:   3'- -UGCGgCGCU-CGGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 168503 0.66 0.806472
Target:  5'- gGC-CCGCGgagaGGCCGuguGUGGAGGCCg- -3'
miRNA:   3'- -UGcGGCGC----UCGGUug-UAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 168293 0.67 0.750908
Target:  5'- cGCGCgGCGGcGCCGGCc-GGGGGCUg- -3'
miRNA:   3'- -UGCGgCGCU-CGGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 157860 0.66 0.840479
Target:  5'- aGCGCCGCcuggaaaaguuGuGCCAcAgGUAGAGGCUc- -3'
miRNA:   3'- -UGCGGCG-----------CuCGGU-UgUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 57924 0.67 0.760483
Target:  5'- cGCGCacgGUG-GCCGaguACAUGGAGGUCUUc -3'
miRNA:   3'- -UGCGg--CGCuCGGU---UGUAUCUCCGGAA- -5'
28839 5' -57.7 NC_006146.1 + 94613 0.66 0.840479
Target:  5'- -aGCCGCGuccAGCCcACGUAcuGGGCCg- -3'
miRNA:   3'- ugCGGCGC---UCGGuUGUAUc-UCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 31834 0.66 0.840479
Target:  5'- cGCGCCaccaGGGCCcgUAUGGuGGCCg- -3'
miRNA:   3'- -UGCGGcg--CUCGGuuGUAUCuCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 45130 0.66 0.828896
Target:  5'- cCGCCGgGAGCCuugggcuuuGCGggcugggugggacGGAGGCCUc -3'
miRNA:   3'- uGCGGCgCUCGGu--------UGUa------------UCUCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 159349 0.66 0.823824
Target:  5'- uGCGCCGCcu-CCAGCAUggcGGGGGCgUa -3'
miRNA:   3'- -UGCGGCGcucGGUUGUA---UCUCCGgAa -5'
28839 5' -57.7 NC_006146.1 + 66527 0.66 0.823824
Target:  5'- cACGCCGCu-GUCaAACAgGGGGGCCc- -3'
miRNA:   3'- -UGCGGCGcuCGG-UUGUaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 39024 0.66 0.814362
Target:  5'- gUGUCGCaacccaaacauggGGGCCAGCAggcAGGGGCCc- -3'
miRNA:   3'- uGCGGCG-------------CUCGGUUGUa--UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 167571 0.66 0.806472
Target:  5'- gGC-CCGCGgagaGGCCGuguGUGGAGGCCg- -3'
miRNA:   3'- -UGcGGCGC----UCGGUug-UAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 90148 0.66 0.806472
Target:  5'- -gGCaGCGgagcaggaggcAGCCGAgGUAGAGGCCg- -3'
miRNA:   3'- ugCGgCGC-----------UCGGUUgUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 55478 0.66 0.806472
Target:  5'- -gGCCGCGGGCgAGaac-GAGGCCc- -3'
miRNA:   3'- ugCGGCGCUCGgUUguauCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 128181 0.67 0.797555
Target:  5'- gACGCCGgGAGgCGGCccagGGGGGCg-- -3'
miRNA:   3'- -UGCGGCgCUCgGUUGua--UCUCCGgaa -5'
28839 5' -57.7 NC_006146.1 + 18887 0.67 0.788489
Target:  5'- -gGCCagcaaGCGAGaCCAGCccAGAGGCCc- -3'
miRNA:   3'- ugCGG-----CGCUC-GGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 12730 0.67 0.788489
Target:  5'- -gGCCagcaaGCGAGaCCAGCccAGAGGCCc- -3'
miRNA:   3'- ugCGG-----CGCUC-GGUUGuaUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 47244 0.67 0.779283
Target:  5'- cUGgCGCGGGUCGACGUGGccccuGGCCc- -3'
miRNA:   3'- uGCgGCGCUCGGUUGUAUCu----CCGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.