miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28839 5' -57.7 NC_006146.1 + 68438 0.69 0.640706
Target:  5'- aACGCCGCG-GCCGGCuccUGGAaaGCCUa -3'
miRNA:   3'- -UGCGGCGCuCGGUUGu--AUCUc-CGGAa -5'
28839 5' -57.7 NC_006146.1 + 121417 0.67 0.779283
Target:  5'- cACGCCGCcccuGGCCGACAccGcGGCCc- -3'
miRNA:   3'- -UGCGGCGc---UCGGUUGUauCuCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 110995 0.67 0.779283
Target:  5'- -aGCCGCGcaccagcagguuGGCCAGCGUGcuGGCCc- -3'
miRNA:   3'- ugCGGCGC------------UCGGUUGUAUcuCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 76726 0.67 0.760483
Target:  5'- cACGCU-CGAgGCCGACAgcuucgUGGAGGCCc- -3'
miRNA:   3'- -UGCGGcGCU-CGGUUGU------AUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 47264 0.67 0.757622
Target:  5'- cACGCCGUGAGCgAgaccggcgacggcuGCGUGGAccuccgcuggcuGGCCa- -3'
miRNA:   3'- -UGCGGCGCUCGgU--------------UGUAUCU------------CCGGaa -5'
28839 5' -57.7 NC_006146.1 + 123886 0.68 0.741229
Target:  5'- gGCGcCCGCGAGuCCGACc---GGGCCg- -3'
miRNA:   3'- -UGC-GGCGCUC-GGUUGuaucUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 10460 0.68 0.711657
Target:  5'- aGCGCCGCcu-UCGugAUGGGGGCCa- -3'
miRNA:   3'- -UGCGGCGcucGGUugUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 42432 0.68 0.741229
Target:  5'- gACGCagcugggugCGCGccGCCAGCAUGGcGGCCg- -3'
miRNA:   3'- -UGCG---------GCGCu-CGGUUGUAUCuCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 121478 0.69 0.661138
Target:  5'- aACGCCGgGu-CCAuCGUGGGGGCCg- -3'
miRNA:   3'- -UGCGGCgCucGGUuGUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 83754 0.67 0.788489
Target:  5'- -gGCCGUGAGCa---GUGGGuGGCCUg -3'
miRNA:   3'- ugCGGCGCUCGguugUAUCU-CCGGAa -5'
28839 5' -57.7 NC_006146.1 + 124463 0.67 0.788489
Target:  5'- uACGCCGCc-GCCuuCcUGGGGGCCc- -3'
miRNA:   3'- -UGCGGCGcuCGGuuGuAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 60468 0.67 0.797555
Target:  5'- -gGCCGCGGGg-AGCGgugAGAGGCCg- -3'
miRNA:   3'- ugCGGCGCUCggUUGUa--UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 114120 0.66 0.848526
Target:  5'- cCGCCGCGcucaCCGA---GGAGGCCUg -3'
miRNA:   3'- uGCGGCGCuc--GGUUguaUCUCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 103748 0.66 0.840479
Target:  5'- gACGCCGCGcucaggagcGGCCAGCGgcucccGGUCUUc -3'
miRNA:   3'- -UGCGGCGC---------UCGGUUGUaucu--CCGGAA- -5'
28839 5' -57.7 NC_006146.1 + 95036 0.66 0.832242
Target:  5'- cCGCCGacaaaugGAGCgaGACAUGGGGGCUc- -3'
miRNA:   3'- uGCGGCg------CUCGg-UUGUAUCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 51574 0.66 0.832242
Target:  5'- gGCGCCGCcgggagGGGCCcgggggAGCcagAGGGGCCa- -3'
miRNA:   3'- -UGCGGCG------CUCGG------UUGua-UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 108894 0.66 0.824673
Target:  5'- aGCGCCGCG-GCCAGCGagucagcagcgaccgAGcaggugacguGGGCCUc -3'
miRNA:   3'- -UGCGGCGCuCGGUUGUa--------------UC----------UCCGGAa -5'
28839 5' -57.7 NC_006146.1 + 127414 0.66 0.814363
Target:  5'- cCGCCGCcgGAGCCggUGUcaacggccgccgaGGAGGCUg- -3'
miRNA:   3'- uGCGGCG--CUCGGuuGUA-------------UCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 117709 0.66 0.806472
Target:  5'- cACGCCGCcccccaaGGCCGGgGccGAGGCCg- -3'
miRNA:   3'- -UGCGGCGc------UCGGUUgUauCUCCGGaa -5'
28839 5' -57.7 NC_006146.1 + 40280 0.66 0.806472
Target:  5'- gGCGCgggcggagGCGGGCCAA---AGAGGCCg- -3'
miRNA:   3'- -UGCGg-------CGCUCGGUUguaUCUCCGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.