Results 21 - 40 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28839 | 5' | -57.7 | NC_006146.1 | + | 114120 | 0.66 | 0.848526 |
Target: 5'- cCGCCGCGcucaCCGA---GGAGGCCUg -3' miRNA: 3'- uGCGGCGCuc--GGUUguaUCUCCGGAa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 103748 | 0.66 | 0.840479 |
Target: 5'- gACGCCGCGcucaggagcGGCCAGCGgcucccGGUCUUc -3' miRNA: 3'- -UGCGGCGC---------UCGGUUGUaucu--CCGGAA- -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 95036 | 0.66 | 0.832242 |
Target: 5'- cCGCCGacaaaugGAGCgaGACAUGGGGGCUc- -3' miRNA: 3'- uGCGGCg------CUCGg-UUGUAUCUCCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 51574 | 0.66 | 0.832242 |
Target: 5'- gGCGCCGCcgggagGGGCCcgggggAGCcagAGGGGCCa- -3' miRNA: 3'- -UGCGGCG------CUCGG------UUGua-UCUCCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 108894 | 0.66 | 0.824673 |
Target: 5'- aGCGCCGCG-GCCAGCGagucagcagcgaccgAGcaggugacguGGGCCUc -3' miRNA: 3'- -UGCGGCGCuCGGUUGUa--------------UC----------UCCGGAa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 127414 | 0.66 | 0.814363 |
Target: 5'- cCGCCGCcgGAGCCggUGUcaacggccgccgaGGAGGCUg- -3' miRNA: 3'- uGCGGCG--CUCGGuuGUA-------------UCUCCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 117709 | 0.66 | 0.806472 |
Target: 5'- cACGCCGCcccccaaGGCCGGgGccGAGGCCg- -3' miRNA: 3'- -UGCGGCGc------UCGGUUgUauCUCCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 40280 | 0.66 | 0.806472 |
Target: 5'- gGCGCgggcggagGCGGGCCAA---AGAGGCCg- -3' miRNA: 3'- -UGCGg-------CGCUCGGUUguaUCUCCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 60468 | 0.67 | 0.797555 |
Target: 5'- -gGCCGCGGGg-AGCGgugAGAGGCCg- -3' miRNA: 3'- ugCGGCGCUCggUUGUa--UCUCCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 123886 | 0.68 | 0.741229 |
Target: 5'- gGCGcCCGCGAGuCCGACc---GGGCCg- -3' miRNA: 3'- -UGC-GGCGCUC-GGUUGuaucUCCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 47264 | 0.67 | 0.757622 |
Target: 5'- cACGCCGUGAGCgAgaccggcgacggcuGCGUGGAccuccgcuggcuGGCCa- -3' miRNA: 3'- -UGCGGCGCUCGgU--------------UGUAUCU------------CCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 76726 | 0.67 | 0.760483 |
Target: 5'- cACGCU-CGAgGCCGACAgcuucgUGGAGGCCc- -3' miRNA: 3'- -UGCGGcGCU-CGGUUGU------AUCUCCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 110995 | 0.67 | 0.779283 |
Target: 5'- -aGCCGCGcaccagcagguuGGCCAGCGUGcuGGCCc- -3' miRNA: 3'- ugCGGCGC------------UCGGUUGUAUcuCCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 121417 | 0.67 | 0.779283 |
Target: 5'- cACGCCGCcccuGGCCGACAccGcGGCCc- -3' miRNA: 3'- -UGCGGCGc---UCGGUUGUauCuCCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 83754 | 0.67 | 0.788489 |
Target: 5'- -gGCCGUGAGCa---GUGGGuGGCCUg -3' miRNA: 3'- ugCGGCGCUCGguugUAUCU-CCGGAa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 124463 | 0.67 | 0.788489 |
Target: 5'- uACGCCGCc-GCCuuCcUGGGGGCCc- -3' miRNA: 3'- -UGCGGCGcuCGGuuGuAUCUCCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 55546 | 0.66 | 0.848526 |
Target: 5'- cCGCCGCcacGCCGGCcaGGAaGGCCUc -3' miRNA: 3'- uGCGGCGcu-CGGUUGuaUCU-CCGGAa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 59886 | 0.74 | 0.408521 |
Target: 5'- cACGCCGCGcgGGCCAGCAcgcuGGCCa- -3' miRNA: 3'- -UGCGGCGC--UCGGUUGUaucuCCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 55765 | 0.73 | 0.434939 |
Target: 5'- -gGCgGCGGGCCAgggGCAgcGAGGCCa- -3' miRNA: 3'- ugCGgCGCUCGGU---UGUauCUCCGGaa -5' |
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28839 | 5' | -57.7 | NC_006146.1 | + | 116564 | 0.73 | 0.453089 |
Target: 5'- gACGuCCGCGuGCCccucauccACGUAGGGGCCa- -3' miRNA: 3'- -UGC-GGCGCuCGGu-------UGUAUCUCCGGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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