miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2884 3' -54.3 NC_001493.1 + 41286 0.68 0.88243
Target:  5'- aGAGUUgaUUCGuGGUCUCGAUgGGA-CCCg -3'
miRNA:   3'- -UUUAG--AGGC-CCAGAGCUGgUCUaGGG- -5'
2884 3' -54.3 NC_001493.1 + 10599 0.68 0.88243
Target:  5'- aAAAUCUCUaaGUCUCgGACCGGGgcugugCCCa -3'
miRNA:   3'- -UUUAGAGGccCAGAG-CUGGUCUa-----GGG- -5'
2884 3' -54.3 NC_001493.1 + 54295 0.68 0.88243
Target:  5'- ---aCUCCGGGUauaucgUGACCaguAGAUCCa -3'
miRNA:   3'- uuuaGAGGCCCAga----GCUGG---UCUAGGg -5'
2884 3' -54.3 NC_001493.1 + 26376 0.68 0.88243
Target:  5'- -----cCCGGGUUUCGGCCccagCCCg -3'
miRNA:   3'- uuuagaGGCCCAGAGCUGGucuaGGG- -5'
2884 3' -54.3 NC_001493.1 + 50635 0.68 0.852135
Target:  5'- cGGGUCUCCGGGga--GGuCCGcGGUCCCc -3'
miRNA:   3'- -UUUAGAGGCCCagagCU-GGU-CUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 102659 0.68 0.852135
Target:  5'- cGAcgUUCCcagaugGGGUCUCGGUCAGcUCCCa -3'
miRNA:   3'- -UUuaGAGG------CCCAGAGCUGGUCuAGGG- -5'
2884 3' -54.3 NC_001493.1 + 10592 0.69 0.839069
Target:  5'- gAGAUUUUCGGGaccugaccacgcggCUCGAuCCGGGUCCUc -3'
miRNA:   3'- -UUUAGAGGCCCa-------------GAGCU-GGUCUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 126146 0.69 0.839069
Target:  5'- gAGAUUUUCGGGaccugaccacgcggCUCGAuCCGGGUCCUc -3'
miRNA:   3'- -UUUAGAGGCCCa-------------GAGCU-GGUCUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 23686 0.69 0.835723
Target:  5'- gGGAUC-CCGGGcgggaUCaugacCGACCAGuAUCCCg -3'
miRNA:   3'- -UUUAGaGGCCC-----AGa----GCUGGUC-UAGGG- -5'
2884 3' -54.3 NC_001493.1 + 82212 0.69 0.818545
Target:  5'- aGAAUCUCCGGaGUUUgCGcucacCCGGGUCUCu -3'
miRNA:   3'- -UUUAGAGGCC-CAGA-GCu----GGUCUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 86562 0.69 0.809688
Target:  5'- cGAUCUCgGucaguaugaGGUCucucUCGGCCGGGUCCUg -3'
miRNA:   3'- uUUAGAGgC---------CCAG----AGCUGGUCUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 112713 0.69 0.800664
Target:  5'- cGAUC-CCGGGgcuUCUCGAUgGGucUCCCg -3'
miRNA:   3'- uUUAGaGGCCC---AGAGCUGgUCu-AGGG- -5'
2884 3' -54.3 NC_001493.1 + 42097 0.7 0.782152
Target:  5'- -uGUCUCCGGaccUUCGACCAGAagCUCg -3'
miRNA:   3'- uuUAGAGGCCca-GAGCUGGUCUa-GGG- -5'
2884 3' -54.3 NC_001493.1 + 46952 0.7 0.772682
Target:  5'- ----aUCCGGGaUCUCGAUCAGcAUCUg -3'
miRNA:   3'- uuuagAGGCCC-AGAGCUGGUC-UAGGg -5'
2884 3' -54.3 NC_001493.1 + 88130 0.7 0.757264
Target:  5'- ---aCUCCGaGUCUCGAUCGaucgcuccaggcgccGAUCCCg -3'
miRNA:   3'- uuuaGAGGCcCAGAGCUGGU---------------CUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 126231 0.71 0.743531
Target:  5'- aAAAUCUCCaaGUCUCgGACCGGGgcugugCCCa -3'
miRNA:   3'- -UUUAGAGGccCAGAG-CUGGUCUa-----GGG- -5'
2884 3' -54.3 NC_001493.1 + 10676 0.71 0.743531
Target:  5'- aAAAUCUCCaaGUCUCgGACCGGGgcugugCCCa -3'
miRNA:   3'- -UUUAGAGGccCAGAG-CUGGUCUa-----GGG- -5'
2884 3' -54.3 NC_001493.1 + 43450 0.71 0.733599
Target:  5'- uGGAUCUCCGGGgggUCgaucugcgCGGCC-GAUCUCg -3'
miRNA:   3'- -UUUAGAGGCCC---AGa-------GCUGGuCUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 22495 0.71 0.703295
Target:  5'- uGAAUUUUCGGGUCUCaucaCAGggCCCg -3'
miRNA:   3'- -UUUAGAGGCCCAGAGcug-GUCuaGGG- -5'
2884 3' -54.3 NC_001493.1 + 94675 0.71 0.703295
Target:  5'- cAGUUaCCGGGUCgugccCGACCGGGgguacgUCCCg -3'
miRNA:   3'- uUUAGaGGCCCAGa----GCUGGUCU------AGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.