miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28840 3' -49 NC_006146.1 + 88863 0.66 0.999293
Target:  5'- gGCGGGGCcUGgGGC-UGU-UGugGCu -3'
miRNA:   3'- aCGCUCCGcAUgUCGuACAaAUugCG- -5'
28840 3' -49 NC_006146.1 + 56515 0.66 0.999293
Target:  5'- cGCGGGGuCGUcgccggccauCAGCAgc--UGACGCg -3'
miRNA:   3'- aCGCUCC-GCAu---------GUCGUacaaAUUGCG- -5'
28840 3' -49 NC_006146.1 + 57771 0.66 0.999293
Target:  5'- cGgGGGGCGUgggagauuugagGCAgccgcccuGCAUGUUgccACGCu -3'
miRNA:   3'- aCgCUCCGCA------------UGU--------CGUACAAau-UGCG- -5'
28840 3' -49 NC_006146.1 + 19151 0.66 0.999293
Target:  5'- cUGaCGGGGC---CAGCGUGUgcgugAACGUg -3'
miRNA:   3'- -AC-GCUCCGcauGUCGUACAaa---UUGCG- -5'
28840 3' -49 NC_006146.1 + 116807 0.66 0.999278
Target:  5'- gGCGugguggaGGGCGUcCAGgaCGUGUgccggGACGCg -3'
miRNA:   3'- aCGC-------UCCGCAuGUC--GUACAaa---UUGCG- -5'
28840 3' -49 NC_006146.1 + 69465 0.66 0.99913
Target:  5'- gGCGAccguGGUGUGCAGCuUGgccgaGACGa -3'
miRNA:   3'- aCGCU----CCGCAUGUCGuACaaa--UUGCg -5'
28840 3' -49 NC_006146.1 + 110073 0.66 0.99913
Target:  5'- aGCGcGGGUGUGCAGCAgcu----CGUc -3'
miRNA:   3'- aCGC-UCCGCAUGUCGUacaaauuGCG- -5'
28840 3' -49 NC_006146.1 + 112152 0.66 0.99913
Target:  5'- uUG-GAGGUagcGUugGCGGCAUGUgugGugGCa -3'
miRNA:   3'- -ACgCUCCG---CA--UGUCGUACAaa-UugCG- -5'
28840 3' -49 NC_006146.1 + 49004 0.66 0.99913
Target:  5'- gGCuGGGGCGUugccCAGCuUGgggaccUGACGCc -3'
miRNA:   3'- aCG-CUCCGCAu---GUCGuACaa----AUUGCG- -5'
28840 3' -49 NC_006146.1 + 18928 0.66 0.999112
Target:  5'- gGUGGGGgGUaacgaggacgggaAgGGCAUGUgguGCGCc -3'
miRNA:   3'- aCGCUCCgCA-------------UgUCGUACAaauUGCG- -5'
28840 3' -49 NC_006146.1 + 2976 0.66 0.998935
Target:  5'- cGCGAGGUacgaGUACGGCAguaccUGguc-AUGCu -3'
miRNA:   3'- aCGCUCCG----CAUGUCGU-----ACaaauUGCG- -5'
28840 3' -49 NC_006146.1 + 153534 0.66 0.998704
Target:  5'- gUGgGGGGCGUGgGGCugcuUGgg-AACGg -3'
miRNA:   3'- -ACgCUCCGCAUgUCGu---ACaaaUUGCg -5'
28840 3' -49 NC_006146.1 + 169649 0.66 0.998431
Target:  5'- gGCGGGGagaaUACAGCugggcGUGgcgGGCGCg -3'
miRNA:   3'- aCGCUCCgc--AUGUCG-----UACaaaUUGCG- -5'
28840 3' -49 NC_006146.1 + 27367 0.66 0.998431
Target:  5'- cGgGGGGCGUcuggACAGCAgcaaccgGggcacaGACGCg -3'
miRNA:   3'- aCgCUCCGCA----UGUCGUa------Caaa---UUGCG- -5'
28840 3' -49 NC_006146.1 + 100439 0.67 0.998112
Target:  5'- uUGCGAGGgGccgACAuGCuauugGUUUAACGa -3'
miRNA:   3'- -ACGCUCCgCa--UGU-CGua---CAAAUUGCg -5'
28840 3' -49 NC_006146.1 + 15143 0.67 0.99774
Target:  5'- gGCGGGGUcUACAGCuccucgGgc-GACGCc -3'
miRNA:   3'- aCGCUCCGcAUGUCGua----CaaaUUGCG- -5'
28840 3' -49 NC_006146.1 + 43873 0.67 0.99774
Target:  5'- gGUGAcaCGcGCAGCGUGUU--GCGCa -3'
miRNA:   3'- aCGCUccGCaUGUCGUACAAauUGCG- -5'
28840 3' -49 NC_006146.1 + 90647 0.67 0.99774
Target:  5'- uUGgGAGGCGccGCGGCGaGg--GugGCa -3'
miRNA:   3'- -ACgCUCCGCa-UGUCGUaCaaaUugCG- -5'
28840 3' -49 NC_006146.1 + 57335 0.67 0.99774
Target:  5'- -cCGAGG-GU-CAGCAUGg--AGCGCc -3'
miRNA:   3'- acGCUCCgCAuGUCGUACaaaUUGCG- -5'
28840 3' -49 NC_006146.1 + 14129 0.67 0.996811
Target:  5'- gGCGGcGGCcUACAGCcagGUgu-ACGCg -3'
miRNA:   3'- aCGCU-CCGcAUGUCGua-CAaauUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.