Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28840 | 3' | -49 | NC_006146.1 | + | 64514 | 1.14 | 0.00731 |
Target: 5'- cUGCGAGGCGUACAGCAUGUUUAACGCg -3' miRNA: 3'- -ACGCUCCGCAUGUCGUACAAAUUGCG- -5' |
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28840 | 3' | -49 | NC_006146.1 | + | 4682 | 0.77 | 0.768696 |
Target: 5'- gGCGAGGCGgggGCAGaucagAUGUUUGAgGUg -3' miRNA: 3'- aCGCUCCGCa--UGUCg----UACAAAUUgCG- -5' |
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28840 | 3' | -49 | NC_006146.1 | + | 41710 | 0.74 | 0.874553 |
Target: 5'- gGCGGGGgGUGCGGCGcUGUggccuuuugcAACGCc -3' miRNA: 3'- aCGCUCCgCAUGUCGU-ACAaa--------UUGCG- -5' |
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28840 | 3' | -49 | NC_006146.1 | + | 113812 | 0.73 | 0.915573 |
Target: 5'- cGCGGGGCugucGUACAGCAgGUUggccaucCGCg -3' miRNA: 3'- aCGCUCCG----CAUGUCGUaCAAauu----GCG- -5' |
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28840 | 3' | -49 | NC_006146.1 | + | 24026 | 0.72 | 0.955834 |
Target: 5'- gGCGAGGCGU-CgucccccuGGCG-GggUGACGCg -3' miRNA: 3'- aCGCUCCGCAuG--------UCGUaCaaAUUGCG- -5' |
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28840 | 3' | -49 | NC_006146.1 | + | 13777 | 0.71 | 0.969951 |
Target: 5'- gGCGAGGCGUGCGccucGCugacucUGgacGACGCc -3' miRNA: 3'- aCGCUCCGCAUGU----CGu-----ACaaaUUGCG- -5' |
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28840 | 3' | -49 | NC_006146.1 | + | 76923 | 0.71 | 0.972905 |
Target: 5'- cGCGGGGC-UGCAGCcgGgugAACuGCc -3' miRNA: 3'- aCGCUCCGcAUGUCGuaCaaaUUG-CG- -5' |
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28840 | 3' | -49 | NC_006146.1 | + | 122373 | 0.71 | 0.972905 |
Target: 5'- gGCGaAGGCGgaUGCGGCGgccaggAACGCg -3' miRNA: 3'- aCGC-UCCGC--AUGUCGUacaaa-UUGCG- -5' |
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28840 | 3' | -49 | NC_006146.1 | + | 59542 | 0.7 | 0.980504 |
Target: 5'- gGUGGGG-GUGCAGCGUGgcgAugGa -3' miRNA: 3'- aCGCUCCgCAUGUCGUACaaaUugCg -5' |
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28840 | 3' | -49 | NC_006146.1 | + | 99864 | 0.7 | 0.984602 |
Target: 5'- cGCGcGGCGUACGG-AUGUa-GACGUc -3' miRNA: 3'- aCGCuCCGCAUGUCgUACAaaUUGCG- -5' |
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28840 | 3' | -49 | NC_006146.1 | + | 57365 | 0.69 | 0.989478 |
Target: 5'- aGgGAGGC-UGCGGCGg---UGGCGCc -3' miRNA: 3'- aCgCUCCGcAUGUCGUacaaAUUGCG- -5' |
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28840 | 3' | -49 | NC_006146.1 | + | 63081 | 0.69 | 0.990802 |
Target: 5'- gGCGAGGCGg--GGCuUGgu--ACGCa -3' miRNA: 3'- aCGCUCCGCaugUCGuACaaauUGCG- -5' |
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28840 | 3' | -49 | NC_006146.1 | + | 124137 | 0.68 | 0.994843 |
Target: 5'- gUGCGGuGGCGcguuugGCAGCAUGgccccAAUGUa -3' miRNA: 3'- -ACGCU-CCGCa-----UGUCGUACaaa--UUGCG- -5' |
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28840 | 3' | -49 | NC_006146.1 | + | 14129 | 0.67 | 0.996811 |
Target: 5'- gGCGGcGGCcUACAGCcagGUgu-ACGCg -3' miRNA: 3'- aCGCU-CCGcAUGUCGua-CAaauUGCG- -5' |
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28840 | 3' | -49 | NC_006146.1 | + | 100254 | 0.67 | 0.996811 |
Target: 5'- gGCGGGGUGUgaGCGGCucUGgugGGgGCa -3' miRNA: 3'- aCGCUCCGCA--UGUCGu-ACaaaUUgCG- -5' |
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28840 | 3' | -49 | NC_006146.1 | + | 69720 | 0.67 | 0.996811 |
Target: 5'- -cCGAGGgGcGCAGCGUGgaguugUAGCGg -3' miRNA: 3'- acGCUCCgCaUGUCGUACaa----AUUGCg -5' |
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28840 | 3' | -49 | NC_006146.1 | + | 15143 | 0.67 | 0.99774 |
Target: 5'- gGCGGGGUcUACAGCuccucgGgc-GACGCc -3' miRNA: 3'- aCGCUCCGcAUGUCGua----CaaaUUGCG- -5' |
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28840 | 3' | -49 | NC_006146.1 | + | 43873 | 0.67 | 0.99774 |
Target: 5'- gGUGAcaCGcGCAGCGUGUU--GCGCa -3' miRNA: 3'- aCGCUccGCaUGUCGUACAAauUGCG- -5' |
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28840 | 3' | -49 | NC_006146.1 | + | 90647 | 0.67 | 0.99774 |
Target: 5'- uUGgGAGGCGccGCGGCGaGg--GugGCa -3' miRNA: 3'- -ACgCUCCGCa-UGUCGUaCaaaUugCG- -5' |
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28840 | 3' | -49 | NC_006146.1 | + | 57335 | 0.67 | 0.99774 |
Target: 5'- -cCGAGG-GU-CAGCAUGg--AGCGCc -3' miRNA: 3'- acGCUCCgCAuGUCGUACaaaUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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