miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28840 3' -49 NC_006146.1 + 14129 0.67 0.996811
Target:  5'- gGCGGcGGCcUACAGCcagGUgu-ACGCg -3'
miRNA:   3'- aCGCU-CCGcAUGUCGua-CAaauUGCG- -5'
28840 3' -49 NC_006146.1 + 100254 0.67 0.996811
Target:  5'- gGCGGGGUGUgaGCGGCucUGgugGGgGCa -3'
miRNA:   3'- aCGCUCCGCA--UGUCGu-ACaaaUUgCG- -5'
28840 3' -49 NC_006146.1 + 124137 0.68 0.994843
Target:  5'- gUGCGGuGGCGcguuugGCAGCAUGgccccAAUGUa -3'
miRNA:   3'- -ACGCU-CCGCa-----UGUCGUACaaa--UUGCG- -5'
28840 3' -49 NC_006146.1 + 63081 0.69 0.990802
Target:  5'- gGCGAGGCGg--GGCuUGgu--ACGCa -3'
miRNA:   3'- aCGCUCCGCaugUCGuACaaauUGCG- -5'
28840 3' -49 NC_006146.1 + 57365 0.69 0.989478
Target:  5'- aGgGAGGC-UGCGGCGg---UGGCGCc -3'
miRNA:   3'- aCgCUCCGcAUGUCGUacaaAUUGCG- -5'
28840 3' -49 NC_006146.1 + 99864 0.7 0.984602
Target:  5'- cGCGcGGCGUACGG-AUGUa-GACGUc -3'
miRNA:   3'- aCGCuCCGCAUGUCgUACAaaUUGCG- -5'
28840 3' -49 NC_006146.1 + 59542 0.7 0.980504
Target:  5'- gGUGGGG-GUGCAGCGUGgcgAugGa -3'
miRNA:   3'- aCGCUCCgCAUGUCGUACaaaUugCg -5'
28840 3' -49 NC_006146.1 + 122373 0.71 0.972905
Target:  5'- gGCGaAGGCGgaUGCGGCGgccaggAACGCg -3'
miRNA:   3'- aCGC-UCCGC--AUGUCGUacaaa-UUGCG- -5'
28840 3' -49 NC_006146.1 + 76923 0.71 0.972905
Target:  5'- cGCGGGGC-UGCAGCcgGgugAACuGCc -3'
miRNA:   3'- aCGCUCCGcAUGUCGuaCaaaUUG-CG- -5'
28840 3' -49 NC_006146.1 + 13777 0.71 0.969951
Target:  5'- gGCGAGGCGUGCGccucGCugacucUGgacGACGCc -3'
miRNA:   3'- aCGCUCCGCAUGU----CGu-----ACaaaUUGCG- -5'
28840 3' -49 NC_006146.1 + 24026 0.72 0.955834
Target:  5'- gGCGAGGCGU-CgucccccuGGCG-GggUGACGCg -3'
miRNA:   3'- aCGCUCCGCAuG--------UCGUaCaaAUUGCG- -5'
28840 3' -49 NC_006146.1 + 113812 0.73 0.915573
Target:  5'- cGCGGGGCugucGUACAGCAgGUUggccaucCGCg -3'
miRNA:   3'- aCGCUCCG----CAUGUCGUaCAAauu----GCG- -5'
28840 3' -49 NC_006146.1 + 41710 0.74 0.874553
Target:  5'- gGCGGGGgGUGCGGCGcUGUggccuuuugcAACGCc -3'
miRNA:   3'- aCGCUCCgCAUGUCGU-ACAaa--------UUGCG- -5'
28840 3' -49 NC_006146.1 + 4682 0.77 0.768696
Target:  5'- gGCGAGGCGgggGCAGaucagAUGUUUGAgGUg -3'
miRNA:   3'- aCGCUCCGCa--UGUCg----UACAAAUUgCG- -5'
28840 3' -49 NC_006146.1 + 64514 1.14 0.00731
Target:  5'- cUGCGAGGCGUACAGCAUGUUUAACGCg -3'
miRNA:   3'- -ACGCUCCGCAUGUCGUACAAAUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.