miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28840 3' -49 NC_006146.1 + 2976 0.66 0.998935
Target:  5'- cGCGAGGUacgaGUACGGCAguaccUGguc-AUGCu -3'
miRNA:   3'- aCGCUCCG----CAUGUCGU-----ACaaauUGCG- -5'
28840 3' -49 NC_006146.1 + 4682 0.77 0.768696
Target:  5'- gGCGAGGCGgggGCAGaucagAUGUUUGAgGUg -3'
miRNA:   3'- aCGCUCCGCa--UGUCg----UACAAAUUgCG- -5'
28840 3' -49 NC_006146.1 + 13777 0.71 0.969951
Target:  5'- gGCGAGGCGUGCGccucGCugacucUGgacGACGCc -3'
miRNA:   3'- aCGCUCCGCAUGU----CGu-----ACaaaUUGCG- -5'
28840 3' -49 NC_006146.1 + 14129 0.67 0.996811
Target:  5'- gGCGGcGGCcUACAGCcagGUgu-ACGCg -3'
miRNA:   3'- aCGCU-CCGcAUGUCGua-CAaauUGCG- -5'
28840 3' -49 NC_006146.1 + 15143 0.67 0.99774
Target:  5'- gGCGGGGUcUACAGCuccucgGgc-GACGCc -3'
miRNA:   3'- aCGCUCCGcAUGUCGua----CaaaUUGCG- -5'
28840 3' -49 NC_006146.1 + 18928 0.66 0.999112
Target:  5'- gGUGGGGgGUaacgaggacgggaAgGGCAUGUgguGCGCc -3'
miRNA:   3'- aCGCUCCgCA-------------UgUCGUACAaauUGCG- -5'
28840 3' -49 NC_006146.1 + 19151 0.66 0.999293
Target:  5'- cUGaCGGGGC---CAGCGUGUgcgugAACGUg -3'
miRNA:   3'- -AC-GCUCCGcauGUCGUACAaa---UUGCG- -5'
28840 3' -49 NC_006146.1 + 24026 0.72 0.955834
Target:  5'- gGCGAGGCGU-CgucccccuGGCG-GggUGACGCg -3'
miRNA:   3'- aCGCUCCGCAuG--------UCGUaCaaAUUGCG- -5'
28840 3' -49 NC_006146.1 + 27367 0.66 0.998431
Target:  5'- cGgGGGGCGUcuggACAGCAgcaaccgGggcacaGACGCg -3'
miRNA:   3'- aCgCUCCGCA----UGUCGUa------Caaa---UUGCG- -5'
28840 3' -49 NC_006146.1 + 41710 0.74 0.874553
Target:  5'- gGCGGGGgGUGCGGCGcUGUggccuuuugcAACGCc -3'
miRNA:   3'- aCGCUCCgCAUGUCGU-ACAaa--------UUGCG- -5'
28840 3' -49 NC_006146.1 + 43873 0.67 0.99774
Target:  5'- gGUGAcaCGcGCAGCGUGUU--GCGCa -3'
miRNA:   3'- aCGCUccGCaUGUCGUACAAauUGCG- -5'
28840 3' -49 NC_006146.1 + 49004 0.66 0.99913
Target:  5'- gGCuGGGGCGUugccCAGCuUGgggaccUGACGCc -3'
miRNA:   3'- aCG-CUCCGCAu---GUCGuACaa----AUUGCG- -5'
28840 3' -49 NC_006146.1 + 56515 0.66 0.999293
Target:  5'- cGCGGGGuCGUcgccggccauCAGCAgc--UGACGCg -3'
miRNA:   3'- aCGCUCC-GCAu---------GUCGUacaaAUUGCG- -5'
28840 3' -49 NC_006146.1 + 57335 0.67 0.99774
Target:  5'- -cCGAGG-GU-CAGCAUGg--AGCGCc -3'
miRNA:   3'- acGCUCCgCAuGUCGUACaaaUUGCG- -5'
28840 3' -49 NC_006146.1 + 57365 0.69 0.989478
Target:  5'- aGgGAGGC-UGCGGCGg---UGGCGCc -3'
miRNA:   3'- aCgCUCCGcAUGUCGUacaaAUUGCG- -5'
28840 3' -49 NC_006146.1 + 57771 0.66 0.999293
Target:  5'- cGgGGGGCGUgggagauuugagGCAgccgcccuGCAUGUUgccACGCu -3'
miRNA:   3'- aCgCUCCGCA------------UGU--------CGUACAAau-UGCG- -5'
28840 3' -49 NC_006146.1 + 59542 0.7 0.980504
Target:  5'- gGUGGGG-GUGCAGCGUGgcgAugGa -3'
miRNA:   3'- aCGCUCCgCAUGUCGUACaaaUugCg -5'
28840 3' -49 NC_006146.1 + 63081 0.69 0.990802
Target:  5'- gGCGAGGCGg--GGCuUGgu--ACGCa -3'
miRNA:   3'- aCGCUCCGCaugUCGuACaaauUGCG- -5'
28840 3' -49 NC_006146.1 + 64514 1.14 0.00731
Target:  5'- cUGCGAGGCGUACAGCAUGUUUAACGCg -3'
miRNA:   3'- -ACGCUCCGCAUGUCGUACAAAUUGCG- -5'
28840 3' -49 NC_006146.1 + 69465 0.66 0.99913
Target:  5'- gGCGAccguGGUGUGCAGCuUGgccgaGACGa -3'
miRNA:   3'- aCGCU----CCGCAUGUCGuACaaa--UUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.