miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28840 3' -49 NC_006146.1 + 69720 0.67 0.996811
Target:  5'- -cCGAGGgGcGCAGCGUGgaguugUAGCGg -3'
miRNA:   3'- acGCUCCgCaUGUCGUACaa----AUUGCg -5'
28840 3' -49 NC_006146.1 + 76923 0.71 0.972905
Target:  5'- cGCGGGGC-UGCAGCcgGgugAACuGCc -3'
miRNA:   3'- aCGCUCCGcAUGUCGuaCaaaUUG-CG- -5'
28840 3' -49 NC_006146.1 + 88863 0.66 0.999293
Target:  5'- gGCGGGGCcUGgGGC-UGU-UGugGCu -3'
miRNA:   3'- aCGCUCCGcAUgUCGuACAaAUugCG- -5'
28840 3' -49 NC_006146.1 + 90647 0.67 0.99774
Target:  5'- uUGgGAGGCGccGCGGCGaGg--GugGCa -3'
miRNA:   3'- -ACgCUCCGCa-UGUCGUaCaaaUugCG- -5'
28840 3' -49 NC_006146.1 + 99864 0.7 0.984602
Target:  5'- cGCGcGGCGUACGG-AUGUa-GACGUc -3'
miRNA:   3'- aCGCuCCGCAUGUCgUACAaaUUGCG- -5'
28840 3' -49 NC_006146.1 + 100254 0.67 0.996811
Target:  5'- gGCGGGGUGUgaGCGGCucUGgugGGgGCa -3'
miRNA:   3'- aCGCUCCGCA--UGUCGu-ACaaaUUgCG- -5'
28840 3' -49 NC_006146.1 + 100439 0.67 0.998112
Target:  5'- uUGCGAGGgGccgACAuGCuauugGUUUAACGa -3'
miRNA:   3'- -ACGCUCCgCa--UGU-CGua---CAAAUUGCg -5'
28840 3' -49 NC_006146.1 + 110073 0.66 0.99913
Target:  5'- aGCGcGGGUGUGCAGCAgcu----CGUc -3'
miRNA:   3'- aCGC-UCCGCAUGUCGUacaaauuGCG- -5'
28840 3' -49 NC_006146.1 + 112152 0.66 0.99913
Target:  5'- uUG-GAGGUagcGUugGCGGCAUGUgugGugGCa -3'
miRNA:   3'- -ACgCUCCG---CA--UGUCGUACAaa-UugCG- -5'
28840 3' -49 NC_006146.1 + 113812 0.73 0.915573
Target:  5'- cGCGGGGCugucGUACAGCAgGUUggccaucCGCg -3'
miRNA:   3'- aCGCUCCG----CAUGUCGUaCAAauu----GCG- -5'
28840 3' -49 NC_006146.1 + 116807 0.66 0.999278
Target:  5'- gGCGugguggaGGGCGUcCAGgaCGUGUgccggGACGCg -3'
miRNA:   3'- aCGC-------UCCGCAuGUC--GUACAaa---UUGCG- -5'
28840 3' -49 NC_006146.1 + 122373 0.71 0.972905
Target:  5'- gGCGaAGGCGgaUGCGGCGgccaggAACGCg -3'
miRNA:   3'- aCGC-UCCGC--AUGUCGUacaaa-UUGCG- -5'
28840 3' -49 NC_006146.1 + 124137 0.68 0.994843
Target:  5'- gUGCGGuGGCGcguuugGCAGCAUGgccccAAUGUa -3'
miRNA:   3'- -ACGCU-CCGCa-----UGUCGUACaaa--UUGCG- -5'
28840 3' -49 NC_006146.1 + 153534 0.66 0.998704
Target:  5'- gUGgGGGGCGUGgGGCugcuUGgg-AACGg -3'
miRNA:   3'- -ACgCUCCGCAUgUCGu---ACaaaUUGCg -5'
28840 3' -49 NC_006146.1 + 169649 0.66 0.998431
Target:  5'- gGCGGGGagaaUACAGCugggcGUGgcgGGCGCg -3'
miRNA:   3'- aCGCUCCgc--AUGUCG-----UACaaaUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.