Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28840 | 5' | -52.4 | NC_006146.1 | + | 62329 | 0.66 | 0.984131 |
Target: 5'- ----cCCGGggGugCCGucaGCUCGCCu -3' miRNA: 3'- uauacGGUCuaCugGGUua-CGAGCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 26894 | 0.66 | 0.975124 |
Target: 5'- ---cGCCGGGUcGCCCGGcUGCUuacgacgacaCGCCu -3' miRNA: 3'- uauaCGGUCUAcUGGGUU-ACGA----------GCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 102335 | 0.66 | 0.975124 |
Target: 5'- ---gGcCCAGAUcGAUCUcg-GCUCGCCa -3' miRNA: 3'- uauaC-GGUCUA-CUGGGuuaCGAGCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 111143 | 0.66 | 0.975124 |
Target: 5'- ----cCCAGGUGGCCgGGcgGCUgGCCu -3' miRNA: 3'- uauacGGUCUACUGGgUUa-CGAgCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 34198 | 0.66 | 0.980003 |
Target: 5'- -gGUGCCAGGcaggGACCUcgcGC-CGCCc -3' miRNA: 3'- uaUACGGUCUa---CUGGGuuaCGaGCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 55706 | 0.66 | 0.980003 |
Target: 5'- ---cGCCGGggGGCUC--UGCcCGCCg -3' miRNA: 3'- uauaCGGUCuaCUGGGuuACGaGCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 39045 | 0.66 | 0.982157 |
Target: 5'- ---gGCCAGcaggcaggGGCCCugugAAUGgUCGCCg -3' miRNA: 3'- uauaCGGUCua------CUGGG----UUACgAGCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 149409 | 0.66 | 0.984131 |
Target: 5'- gGUAgacgGCCAGGUGAggcauCUgGGUGCUCuuguagGCCg -3' miRNA: 3'- -UAUa---CGGUCUACU-----GGgUUACGAG------CGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 138028 | 0.66 | 0.980003 |
Target: 5'- -gGUGCCAGGcaggGACCUcgcGC-CGCCc -3' miRNA: 3'- uaUACGGUCUa---CUGGGuuaCGaGCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 13272 | 0.66 | 0.977661 |
Target: 5'- -gGUGCCcaa-GACCCAggcgGUGCcCGCCc -3' miRNA: 3'- uaUACGGucuaCUGGGU----UACGaGCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 110288 | 0.66 | 0.980003 |
Target: 5'- --cUGCCAuGAUGGCCUcg-GCguaggcguucaUCGCCg -3' miRNA: 3'- uauACGGU-CUACUGGGuuaCG-----------AGCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 15883 | 0.66 | 0.980003 |
Target: 5'- -cGUGCCGGAgGGCUC---GCUgGCCu -3' miRNA: 3'- uaUACGGUCUaCUGGGuuaCGAgCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 157615 | 0.66 | 0.984131 |
Target: 5'- ---cGCCuGGAggcgGACCCGAgggGCUcuggggCGCCg -3' miRNA: 3'- uauaCGG-UCUa---CUGGGUUa--CGA------GCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 154537 | 0.66 | 0.984131 |
Target: 5'- ---cGCCuGGAggcgGACCCGAgggGCUcuggggCGCCg -3' miRNA: 3'- uauaCGG-UCUa---CUGGGUUa--CGA------GCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 151459 | 0.66 | 0.984131 |
Target: 5'- ---cGCCuGGAggcgGACCCGAgggGCUcuggggCGCCg -3' miRNA: 3'- uauaCGG-UCUa---CUGGGUUa--CGA------GCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 148381 | 0.66 | 0.984131 |
Target: 5'- ---cGCCuGGAggcgGACCCGAgggGCUcuggggCGCCg -3' miRNA: 3'- uauaCGG-UCUa---CUGGGUUa--CGA------GCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 145303 | 0.66 | 0.984131 |
Target: 5'- ---cGCCuGGAggcgGACCCGAgggGCUcuggggCGCCg -3' miRNA: 3'- uauaCGG-UCUa---CUGGGUUa--CGA------GCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 142225 | 0.66 | 0.984131 |
Target: 5'- ---cGCCuGGAggcgGACCCGAgggGCUcuggggCGCCg -3' miRNA: 3'- uauaCGG-UCUa---CUGGGUUa--CGA------GCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 124782 | 0.66 | 0.983942 |
Target: 5'- ---gGCCAG--GGCCCGGgcaugccugcugcUGCUCGCg -3' miRNA: 3'- uauaCGGUCuaCUGGGUU-------------ACGAGCGg -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 56827 | 0.66 | 0.98195 |
Target: 5'- -gGUGCCGGAUGagauuGCCCGGauagaccUGgaUGCCc -3' miRNA: 3'- uaUACGGUCUAC-----UGGGUU-------ACgaGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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