miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28840 5' -52.4 NC_006146.1 + 148381 0.66 0.984131
Target:  5'- ---cGCCuGGAggcgGACCCGAgggGCUcuggggCGCCg -3'
miRNA:   3'- uauaCGG-UCUa---CUGGGUUa--CGA------GCGG- -5'
28840 5' -52.4 NC_006146.1 + 145303 0.66 0.984131
Target:  5'- ---cGCCuGGAggcgGACCCGAgggGCUcuggggCGCCg -3'
miRNA:   3'- uauaCGG-UCUa---CUGGGUUa--CGA------GCGG- -5'
28840 5' -52.4 NC_006146.1 + 142225 0.66 0.984131
Target:  5'- ---cGCCuGGAggcgGACCCGAgggGCUcuggggCGCCg -3'
miRNA:   3'- uauaCGG-UCUa---CUGGGUUa--CGA------GCGG- -5'
28840 5' -52.4 NC_006146.1 + 13272 0.66 0.977661
Target:  5'- -gGUGCCcaa-GACCCAggcgGUGCcCGCCc -3'
miRNA:   3'- uaUACGGucuaCUGGGU----UACGaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 124782 0.66 0.983942
Target:  5'- ---gGCCAG--GGCCCGGgcaugccugcugcUGCUCGCg -3'
miRNA:   3'- uauaCGGUCuaCUGGGUU-------------ACGAGCGg -5'
28840 5' -52.4 NC_006146.1 + 56827 0.66 0.98195
Target:  5'- -gGUGCCGGAUGagauuGCCCGGauagaccUGgaUGCCc -3'
miRNA:   3'- uaUACGGUCUAC-----UGGGUU-------ACgaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 15883 0.66 0.980003
Target:  5'- -cGUGCCGGAgGGCUC---GCUgGCCu -3'
miRNA:   3'- uaUACGGUCUaCUGGGuuaCGAgCGG- -5'
28840 5' -52.4 NC_006146.1 + 110288 0.66 0.980003
Target:  5'- --cUGCCAuGAUGGCCUcg-GCguaggcguucaUCGCCg -3'
miRNA:   3'- uauACGGU-CUACUGGGuuaCG-----------AGCGG- -5'
28840 5' -52.4 NC_006146.1 + 26894 0.66 0.975124
Target:  5'- ---cGCCGGGUcGCCCGGcUGCUuacgacgacaCGCCu -3'
miRNA:   3'- uauaCGGUCUAcUGGGUU-ACGA----------GCGG- -5'
28840 5' -52.4 NC_006146.1 + 29608 0.67 0.959231
Target:  5'- ---aGCCAGGcUGAacccgCCAAUGCUC-CCa -3'
miRNA:   3'- uauaCGGUCU-ACUg----GGUUACGAGcGG- -5'
28840 5' -52.4 NC_006146.1 + 4930 0.67 0.959231
Target:  5'- --cUGUCGGGUGGCC--GUGCUCuguGCCc -3'
miRNA:   3'- uauACGGUCUACUGGguUACGAG---CGG- -5'
28840 5' -52.4 NC_006146.1 + 169122 0.67 0.962859
Target:  5'- -gAUGUCGGGgagGGCCCGggGC-CGCg -3'
miRNA:   3'- uaUACGGUCUa--CUGGGUuaCGaGCGg -5'
28840 5' -52.4 NC_006146.1 + 74725 0.67 0.968186
Target:  5'- ---gGCCAGAaaggcccuggaggGACCCAGUGa--GCCa -3'
miRNA:   3'- uauaCGGUCUa------------CUGGGUUACgagCGG- -5'
28840 5' -52.4 NC_006146.1 + 170054 0.67 0.962859
Target:  5'- -gAUGUCGGGgagGGCCCGggGC-CGCg -3'
miRNA:   3'- uaUACGGUCUa--CUGGGUuaCGaGCGg -5'
28840 5' -52.4 NC_006146.1 + 167258 0.67 0.962859
Target:  5'- -gAUGUCGGGgagGGCCCGggGC-CGCg -3'
miRNA:   3'- uaUACGGUCUa--CUGGGUuaCGaGCGg -5'
28840 5' -52.4 NC_006146.1 + 33354 0.67 0.969429
Target:  5'- ---aGCCGGGUGGCcgCCGGUGggucCGCCg -3'
miRNA:   3'- uauaCGGUCUACUG--GGUUACga--GCGG- -5'
28840 5' -52.4 NC_006146.1 + 131496 0.67 0.966584
Target:  5'- -gGUGCCAGGgaucgaccgggaaagGGCCCAggGUaaccgggCGCCg -3'
miRNA:   3'- uaUACGGUCUa--------------CUGGGUuaCGa------GCGG- -5'
28840 5' -52.4 NC_006146.1 + 48662 0.67 0.966257
Target:  5'- ---cGCCuucuGAauccUGGCCC-AUGCUuCGCCg -3'
miRNA:   3'- uauaCGGu---CU----ACUGGGuUACGA-GCGG- -5'
28840 5' -52.4 NC_006146.1 + 168190 0.67 0.962859
Target:  5'- -gAUGUCGGGgagGGCCCGggGC-CGCg -3'
miRNA:   3'- uaUACGGUCUa--CUGGGUuaCGaGCGg -5'
28840 5' -52.4 NC_006146.1 + 115077 0.67 0.959231
Target:  5'- ---gGCCGGGUGcccACCCAGgcGCUgGCUg -3'
miRNA:   3'- uauaCGGUCUAC---UGGGUUa-CGAgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.