miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28840 5' -52.4 NC_006146.1 + 131496 0.67 0.966584
Target:  5'- -gGUGCCAGGgaucgaccgggaaagGGCCCAggGUaaccgggCGCCg -3'
miRNA:   3'- uaUACGGUCUa--------------CUGGGUuaCGa------GCGG- -5'
28840 5' -52.4 NC_006146.1 + 74725 0.67 0.968186
Target:  5'- ---gGCCAGAaaggcccuggaggGACCCAGUGa--GCCa -3'
miRNA:   3'- uauaCGGUCUa------------CUGGGUUACgagCGG- -5'
28840 5' -52.4 NC_006146.1 + 29608 0.67 0.959231
Target:  5'- ---aGCCAGGcUGAacccgCCAAUGCUC-CCa -3'
miRNA:   3'- uauaCGGUCU-ACUg----GGUUACGAGcGG- -5'
28840 5' -52.4 NC_006146.1 + 51554 0.67 0.966257
Target:  5'- ---cGCCGuacguGAUGACCCuggGCgcCGCCg -3'
miRNA:   3'- uauaCGGU-----CUACUGGGuuaCGa-GCGG- -5'
28840 5' -52.4 NC_006146.1 + 41856 0.67 0.969429
Target:  5'- ---cGCCGGcgucugGGCCCAGcucggGCUgCGCCg -3'
miRNA:   3'- uauaCGGUCua----CUGGGUUa----CGA-GCGG- -5'
28840 5' -52.4 NC_006146.1 + 33354 0.67 0.969429
Target:  5'- ---aGCCGGGUGGCcgCCGGUGggucCGCCg -3'
miRNA:   3'- uauaCGGUCUACUG--GGUUACga--GCGG- -5'
28840 5' -52.4 NC_006146.1 + 122334 0.67 0.969429
Target:  5'- uUGUGCCAGggGGCCgA--GCUCaGCa -3'
miRNA:   3'- uAUACGGUCuaCUGGgUuaCGAG-CGg -5'
28840 5' -52.4 NC_006146.1 + 296 0.68 0.937457
Target:  5'- ----cCCGGGggcgGGCCCGGcgcGCUCGCCa -3'
miRNA:   3'- uauacGGUCUa---CUGGGUUa--CGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 114687 0.68 0.937457
Target:  5'- ---cGCUGGAcGGCUCGcgGCUCGUCc -3'
miRNA:   3'- uauaCGGUCUaCUGGGUuaCGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 12040 0.68 0.932353
Target:  5'- -cGUGgCGGGUGcggccaccaGCCCcauGUGCUCGCUu -3'
miRNA:   3'- uaUACgGUCUAC---------UGGGu--UACGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 78747 0.68 0.932353
Target:  5'- -aAUGUCAGcguGUGAgCCAG-GCUUGCCc -3'
miRNA:   3'- uaUACGGUC---UACUgGGUUaCGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 76910 0.68 0.946909
Target:  5'- ---aGCCAGAggUGACCgCGggGCUgcaGCCg -3'
miRNA:   3'- uauaCGGUCU--ACUGG-GUuaCGAg--CGG- -5'
28840 5' -52.4 NC_006146.1 + 117287 0.68 0.95126
Target:  5'- ---aGUCGGugcacGGCCCGGUGCcgCGCCc -3'
miRNA:   3'- uauaCGGUCua---CUGGGUUACGa-GCGG- -5'
28840 5' -52.4 NC_006146.1 + 110382 0.68 0.95126
Target:  5'- ---gGCgAGAauugGGCCCAGUGggagcaccCUCGCCg -3'
miRNA:   3'- uauaCGgUCUa---CUGGGUUAC--------GAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 152800 0.68 0.942309
Target:  5'- ---cGUUGGA-GGCCCGcUGCUCGUCg -3'
miRNA:   3'- uauaCGGUCUaCUGGGUuACGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 60518 0.68 0.942309
Target:  5'- -gGUGCUcccacugGGCCCAAUuCUCGCCa -3'
miRNA:   3'- uaUACGGucua---CUGGGUUAcGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 72591 0.69 0.909392
Target:  5'- -cGUGCCAGAcGGCCaCGGaGCaCGCCc -3'
miRNA:   3'- uaUACGGUCUaCUGG-GUUaCGaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 96325 0.69 0.92138
Target:  5'- --uUGCCGGAgcagUGaccuucgacaGCCCGGUGCagCGCCu -3'
miRNA:   3'- uauACGGUCU----AC----------UGGGUUACGa-GCGG- -5'
28840 5' -52.4 NC_006146.1 + 108427 0.69 0.915513
Target:  5'- cGUGgcgGCCAGGUgGACgCAGUGCcCGUCc -3'
miRNA:   3'- -UAUa--CGGUCUA-CUGgGUUACGaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 143944 0.69 0.915513
Target:  5'- --cUGCCGGGUaauGCCCGGUcGCUuaCGCCg -3'
miRNA:   3'- uauACGGUCUAc--UGGGUUA-CGA--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.