Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28840 | 5' | -52.4 | NC_006146.1 | + | 64551 | 1.1 | 0.00544 |
Target: 5'- gAUAUGCCAGAUGACCCAAUGCUCGCCc -3' miRNA: 3'- -UAUACGGUCUACUGGGUUACGAGCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 101487 | 0.77 | 0.533006 |
Target: 5'- cUGUGCUcGGUGGCCC--UGCUCGUCa -3' miRNA: 3'- uAUACGGuCUACUGGGuuACGAGCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 62827 | 0.75 | 0.637485 |
Target: 5'- uUGUGCCu-GUGGCCCAG-GCUgGCCa -3' miRNA: 3'- uAUACGGucUACUGGGUUaCGAgCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 45592 | 0.75 | 0.658588 |
Target: 5'- -cAUGCCAGAUGaaauuuaccacGCCCuucagAGUGCUgGCCu -3' miRNA: 3'- uaUACGGUCUAC-----------UGGG-----UUACGAgCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 35008 | 0.75 | 0.626923 |
Target: 5'- ---gGUCAGcUGA-CCGAUGCUCGCCa -3' miRNA: 3'- uauaCGGUCuACUgGGUUACGAGCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 138838 | 0.75 | 0.626923 |
Target: 5'- ---gGUCAGcUGA-CCGAUGCUCGCCa -3' miRNA: 3'- uauaCGGUCuACUgGGUUACGAGCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 15410 | 0.74 | 0.6796 |
Target: 5'- ---cGCCAGGUGGCCuCAGagggGCUgGCCc -3' miRNA: 3'- uauaCGGUCUACUGG-GUUa---CGAgCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 85361 | 0.73 | 0.721047 |
Target: 5'- cGUGUGaCCAGAUG-CCCGGUGgagaCGCCa -3' miRNA: 3'- -UAUAC-GGUCUACuGGGUUACga--GCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 33108 | 0.72 | 0.790058 |
Target: 5'- ---aGCCGGGUGGCCgCcggcggGUUCGCCg -3' miRNA: 3'- uauaCGGUCUACUGG-Guua---CGAGCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 30982 | 0.72 | 0.808561 |
Target: 5'- uAUGUGCCAug-GACCCAGga-UCGCCc -3' miRNA: 3'- -UAUACGGUcuaCUGGGUUacgAGCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 56305 | 0.71 | 0.835015 |
Target: 5'- ---cGCCucgAGGUGGCCCAGgccguaGCUgCGCCg -3' miRNA: 3'- uauaCGG---UCUACUGGGUUa-----CGA-GCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 66948 | 0.71 | 0.835015 |
Target: 5'- -cGUGCCGGGaGACaaaGAgcUGCUCGCCc -3' miRNA: 3'- uaUACGGUCUaCUGgg-UU--ACGAGCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 128483 | 0.71 | 0.851683 |
Target: 5'- uGUAgGCCAGggGGCCCAcgGCggGCa -3' miRNA: 3'- -UAUaCGGUCuaCUGGGUuaCGagCGg -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 168586 | 0.7 | 0.87508 |
Target: 5'- -cGUGCCGGggGACCCGGggGCgUGUCc -3' miRNA: 3'- uaUACGGUCuaCUGGGUUa-CGaGCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 170449 | 0.7 | 0.87508 |
Target: 5'- -cGUGCCGGggGACCCGGggGCgUGUCc -3' miRNA: 3'- uaUACGGUCuaCUGGGUUa-CGaGCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 64091 | 0.7 | 0.896398 |
Target: 5'- cUAUGCCAGuGUGGCUgAAUuCUCGCg -3' miRNA: 3'- uAUACGGUC-UACUGGgUUAcGAGCGg -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 105765 | 0.7 | 0.87508 |
Target: 5'- gGUGUGCCAGGaaGGCCUcuaugugGCUCGCg -3' miRNA: 3'- -UAUACGGUCUa-CUGGGuua----CGAGCGg -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 122866 | 0.7 | 0.867504 |
Target: 5'- ---cGCUGGAcGACCCGAgccgGCcCGCCg -3' miRNA: 3'- uauaCGGUCUaCUGGGUUa---CGaGCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 169518 | 0.7 | 0.87508 |
Target: 5'- -cGUGCCGGggGACCCGGggGCgUGUCc -3' miRNA: 3'- uaUACGGUCuaCUGGGUUa-CGaGCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 72591 | 0.69 | 0.909392 |
Target: 5'- -cGUGCCAGAcGGCCaCGGaGCaCGCCc -3' miRNA: 3'- uaUACGGUCUaCUGG-GUUaCGaGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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