miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28840 5' -52.4 NC_006146.1 + 64551 1.1 0.00544
Target:  5'- gAUAUGCCAGAUGACCCAAUGCUCGCCc -3'
miRNA:   3'- -UAUACGGUCUACUGGGUUACGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 101487 0.77 0.533006
Target:  5'- cUGUGCUcGGUGGCCC--UGCUCGUCa -3'
miRNA:   3'- uAUACGGuCUACUGGGuuACGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 138838 0.75 0.626923
Target:  5'- ---gGUCAGcUGA-CCGAUGCUCGCCa -3'
miRNA:   3'- uauaCGGUCuACUgGGUUACGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 35008 0.75 0.626923
Target:  5'- ---gGUCAGcUGA-CCGAUGCUCGCCa -3'
miRNA:   3'- uauaCGGUCuACUgGGUUACGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 62827 0.75 0.637485
Target:  5'- uUGUGCCu-GUGGCCCAG-GCUgGCCa -3'
miRNA:   3'- uAUACGGucUACUGGGUUaCGAgCGG- -5'
28840 5' -52.4 NC_006146.1 + 45592 0.75 0.658588
Target:  5'- -cAUGCCAGAUGaaauuuaccacGCCCuucagAGUGCUgGCCu -3'
miRNA:   3'- uaUACGGUCUAC-----------UGGG-----UUACGAgCGG- -5'
28840 5' -52.4 NC_006146.1 + 15410 0.74 0.6796
Target:  5'- ---cGCCAGGUGGCCuCAGagggGCUgGCCc -3'
miRNA:   3'- uauaCGGUCUACUGG-GUUa---CGAgCGG- -5'
28840 5' -52.4 NC_006146.1 + 85361 0.73 0.721047
Target:  5'- cGUGUGaCCAGAUG-CCCGGUGgagaCGCCa -3'
miRNA:   3'- -UAUAC-GGUCUACuGGGUUACga--GCGG- -5'
28840 5' -52.4 NC_006146.1 + 33108 0.72 0.790058
Target:  5'- ---aGCCGGGUGGCCgCcggcggGUUCGCCg -3'
miRNA:   3'- uauaCGGUCUACUGG-Guua---CGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 30982 0.72 0.808561
Target:  5'- uAUGUGCCAug-GACCCAGga-UCGCCc -3'
miRNA:   3'- -UAUACGGUcuaCUGGGUUacgAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 56305 0.71 0.835015
Target:  5'- ---cGCCucgAGGUGGCCCAGgccguaGCUgCGCCg -3'
miRNA:   3'- uauaCGG---UCUACUGGGUUa-----CGA-GCGG- -5'
28840 5' -52.4 NC_006146.1 + 66948 0.71 0.835015
Target:  5'- -cGUGCCGGGaGACaaaGAgcUGCUCGCCc -3'
miRNA:   3'- uaUACGGUCUaCUGgg-UU--ACGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 128483 0.71 0.851683
Target:  5'- uGUAgGCCAGggGGCCCAcgGCggGCa -3'
miRNA:   3'- -UAUaCGGUCuaCUGGGUuaCGagCGg -5'
28840 5' -52.4 NC_006146.1 + 122866 0.7 0.867504
Target:  5'- ---cGCUGGAcGACCCGAgccgGCcCGCCg -3'
miRNA:   3'- uauaCGGUCUaCUGGGUUa---CGaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 169518 0.7 0.87508
Target:  5'- -cGUGCCGGggGACCCGGggGCgUGUCc -3'
miRNA:   3'- uaUACGGUCuaCUGGGUUa-CGaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 105765 0.7 0.87508
Target:  5'- gGUGUGCCAGGaaGGCCUcuaugugGCUCGCg -3'
miRNA:   3'- -UAUACGGUCUa-CUGGGuua----CGAGCGg -5'
28840 5' -52.4 NC_006146.1 + 168586 0.7 0.87508
Target:  5'- -cGUGCCGGggGACCCGGggGCgUGUCc -3'
miRNA:   3'- uaUACGGUCuaCUGGGUUa-CGaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 170449 0.7 0.87508
Target:  5'- -cGUGCCGGggGACCCGGggGCgUGUCc -3'
miRNA:   3'- uaUACGGUCuaCUGGGUUa-CGaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 64091 0.7 0.896398
Target:  5'- cUAUGCCAGuGUGGCUgAAUuCUCGCg -3'
miRNA:   3'- uAUACGGUC-UACUGGgUUAcGAGCGg -5'
28840 5' -52.4 NC_006146.1 + 72591 0.69 0.909392
Target:  5'- -cGUGCCAGAcGGCCaCGGaGCaCGCCc -3'
miRNA:   3'- uaUACGGUCUaCUGG-GUUaCGaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.