miRNA display CGI


Results 21 - 40 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28840 5' -52.4 NC_006146.1 + 108427 0.69 0.915513
Target:  5'- cGUGgcgGCCAGGUgGACgCAGUGCcCGUCc -3'
miRNA:   3'- -UAUa--CGGUCUA-CUGgGUUACGaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 143944 0.69 0.915513
Target:  5'- --cUGCCGGGUaauGCCCGGUcGCUuaCGCCg -3'
miRNA:   3'- uauACGGUCUAc--UGGGUUA-CGA--GCGG- -5'
28840 5' -52.4 NC_006146.1 + 96325 0.69 0.92138
Target:  5'- --uUGCCGGAgcagUGaccuucgacaGCCCGGUGCagCGCCu -3'
miRNA:   3'- uauACGGUCU----AC----------UGGGUUACGa-GCGG- -5'
28840 5' -52.4 NC_006146.1 + 143244 0.69 0.926994
Target:  5'- -gGUGCCaAGAaaccaggcUGGCCCGGUgacGCUgGCCc -3'
miRNA:   3'- uaUACGG-UCU--------ACUGGGUUA---CGAgCGG- -5'
28840 5' -52.4 NC_006146.1 + 78747 0.68 0.932353
Target:  5'- -aAUGUCAGcguGUGAgCCAG-GCUUGCCc -3'
miRNA:   3'- uaUACGGUC---UACUgGGUUaCGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 12040 0.68 0.932353
Target:  5'- -cGUGgCGGGUGcggccaccaGCCCcauGUGCUCGCUu -3'
miRNA:   3'- uaUACgGUCUAC---------UGGGu--UACGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 114687 0.68 0.937457
Target:  5'- ---cGCUGGAcGGCUCGcgGCUCGUCc -3'
miRNA:   3'- uauaCGGUCUaCUGGGUuaCGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 296 0.68 0.937457
Target:  5'- ----cCCGGGggcgGGCCCGGcgcGCUCGCCa -3'
miRNA:   3'- uauacGGUCUa---CUGGGUUa--CGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 152800 0.68 0.942309
Target:  5'- ---cGUUGGA-GGCCCGcUGCUCGUCg -3'
miRNA:   3'- uauaCGGUCUaCUGGGUuACGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 60518 0.68 0.942309
Target:  5'- -gGUGCUcccacugGGCCCAAUuCUCGCCa -3'
miRNA:   3'- uaUACGGucua---CUGGGUUAcGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 76910 0.68 0.946909
Target:  5'- ---aGCCAGAggUGACCgCGggGCUgcaGCCg -3'
miRNA:   3'- uauaCGGUCU--ACUGG-GUuaCGAg--CGG- -5'
28840 5' -52.4 NC_006146.1 + 110382 0.68 0.95126
Target:  5'- ---gGCgAGAauugGGCCCAGUGggagcaccCUCGCCg -3'
miRNA:   3'- uauaCGgUCUa---CUGGGUUAC--------GAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 117287 0.68 0.95126
Target:  5'- ---aGUCGGugcacGGCCCGGUGCcgCGCCc -3'
miRNA:   3'- uauaCGGUCua---CUGGGUUACGa-GCGG- -5'
28840 5' -52.4 NC_006146.1 + 128786 0.67 0.955366
Target:  5'- -cGUGCCAGA-GGCCCucguAGUcGUgCGCCg -3'
miRNA:   3'- uaUACGGUCUaCUGGG----UUA-CGaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 75250 0.67 0.956941
Target:  5'- cAUAUGCCAGAucccauggcaggggcUuuuGACCCAAgaccUGCUCcauuGCCu -3'
miRNA:   3'- -UAUACGGUCU---------------A---CUGGGUU----ACGAG----CGG- -5'
28840 5' -52.4 NC_006146.1 + 29608 0.67 0.959231
Target:  5'- ---aGCCAGGcUGAacccgCCAAUGCUC-CCa -3'
miRNA:   3'- uauaCGGUCU-ACUg----GGUUACGAGcGG- -5'
28840 5' -52.4 NC_006146.1 + 115077 0.67 0.959231
Target:  5'- ---gGCCGGGUGcccACCCAGgcGCUgGCUg -3'
miRNA:   3'- uauaCGGUCUAC---UGGGUUa-CGAgCGG- -5'
28840 5' -52.4 NC_006146.1 + 4930 0.67 0.959231
Target:  5'- --cUGUCGGGUGGCC--GUGCUCuguGCCc -3'
miRNA:   3'- uauACGGUCUACUGGguUACGAG---CGG- -5'
28840 5' -52.4 NC_006146.1 + 167258 0.67 0.962859
Target:  5'- -gAUGUCGGGgagGGCCCGggGC-CGCg -3'
miRNA:   3'- uaUACGGUCUa--CUGGGUuaCGaGCGg -5'
28840 5' -52.4 NC_006146.1 + 168190 0.67 0.962859
Target:  5'- -gAUGUCGGGgagGGCCCGggGC-CGCg -3'
miRNA:   3'- uaUACGGUCUa--CUGGGUuaCGaGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.