miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28840 5' -52.4 NC_006146.1 + 34198 0.66 0.980003
Target:  5'- -gGUGCCAGGcaggGACCUcgcGC-CGCCc -3'
miRNA:   3'- uaUACGGUCUa---CUGGGuuaCGaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 15883 0.66 0.980003
Target:  5'- -cGUGCCGGAgGGCUC---GCUgGCCu -3'
miRNA:   3'- uaUACGGUCUaCUGGGuuaCGAgCGG- -5'
28840 5' -52.4 NC_006146.1 + 110288 0.66 0.980003
Target:  5'- --cUGCCAuGAUGGCCUcg-GCguaggcguucaUCGCCg -3'
miRNA:   3'- uauACGGU-CUACUGGGuuaCG-----------AGCGG- -5'
28840 5' -52.4 NC_006146.1 + 138028 0.66 0.980003
Target:  5'- -gGUGCCAGGcaggGACCUcgcGC-CGCCc -3'
miRNA:   3'- uaUACGGUCUa---CUGGGuuaCGaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 13272 0.66 0.977661
Target:  5'- -gGUGCCcaa-GACCCAggcgGUGCcCGCCc -3'
miRNA:   3'- uaUACGGucuaCUGGGU----UACGaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 102335 0.66 0.975124
Target:  5'- ---gGcCCAGAUcGAUCUcg-GCUCGCCa -3'
miRNA:   3'- uauaC-GGUCUA-CUGGGuuaCGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 26894 0.66 0.975124
Target:  5'- ---cGCCGGGUcGCCCGGcUGCUuacgacgacaCGCCu -3'
miRNA:   3'- uauaCGGUCUAcUGGGUU-ACGA----------GCGG- -5'
28840 5' -52.4 NC_006146.1 + 111143 0.66 0.975124
Target:  5'- ----cCCAGGUGGCCgGGcgGCUgGCCu -3'
miRNA:   3'- uauacGGUCUACUGGgUUa-CGAgCGG- -5'
28840 5' -52.4 NC_006146.1 + 114135 0.66 0.975124
Target:  5'- -cAUGUCGGAUGAggcUCCGgaccaggcgcAUGCUgGCCc -3'
miRNA:   3'- uaUACGGUCUACU---GGGU----------UACGAgCGG- -5'
28840 5' -52.4 NC_006146.1 + 41856 0.67 0.969429
Target:  5'- ---cGCCGGcgucugGGCCCAGcucggGCUgCGCCg -3'
miRNA:   3'- uauaCGGUCua----CUGGGUUa----CGA-GCGG- -5'
28840 5' -52.4 NC_006146.1 + 122334 0.67 0.969429
Target:  5'- uUGUGCCAGggGGCCgA--GCUCaGCa -3'
miRNA:   3'- uAUACGGUCuaCUGGgUuaCGAG-CGg -5'
28840 5' -52.4 NC_006146.1 + 33354 0.67 0.969429
Target:  5'- ---aGCCGGGUGGCcgCCGGUGggucCGCCg -3'
miRNA:   3'- uauaCGGUCUACUG--GGUUACga--GCGG- -5'
28840 5' -52.4 NC_006146.1 + 74725 0.67 0.968186
Target:  5'- ---gGCCAGAaaggcccuggaggGACCCAGUGa--GCCa -3'
miRNA:   3'- uauaCGGUCUa------------CUGGGUUACgagCGG- -5'
28840 5' -52.4 NC_006146.1 + 131496 0.67 0.966584
Target:  5'- -gGUGCCAGGgaucgaccgggaaagGGCCCAggGUaaccgggCGCCg -3'
miRNA:   3'- uaUACGGUCUa--------------CUGGGUuaCGa------GCGG- -5'
28840 5' -52.4 NC_006146.1 + 51554 0.67 0.966257
Target:  5'- ---cGCCGuacguGAUGACCCuggGCgcCGCCg -3'
miRNA:   3'- uauaCGGU-----CUACUGGGuuaCGa-GCGG- -5'
28840 5' -52.4 NC_006146.1 + 33232 0.67 0.966257
Target:  5'- ---aGCCGGGUGGCCgccgGCgggucCGCCg -3'
miRNA:   3'- uauaCGGUCUACUGGguuaCGa----GCGG- -5'
28840 5' -52.4 NC_006146.1 + 48662 0.67 0.966257
Target:  5'- ---cGCCuucuGAauccUGGCCC-AUGCUuCGCCg -3'
miRNA:   3'- uauaCGGu---CU----ACUGGGuUACGA-GCGG- -5'
28840 5' -52.4 NC_006146.1 + 168190 0.67 0.962859
Target:  5'- -gAUGUCGGGgagGGCCCGggGC-CGCg -3'
miRNA:   3'- uaUACGGUCUa--CUGGGUuaCGaGCGg -5'
28840 5' -52.4 NC_006146.1 + 169122 0.67 0.962859
Target:  5'- -gAUGUCGGGgagGGCCCGggGC-CGCg -3'
miRNA:   3'- uaUACGGUCUa--CUGGGUuaCGaGCGg -5'
28840 5' -52.4 NC_006146.1 + 170054 0.67 0.962859
Target:  5'- -gAUGUCGGGgagGGCCCGggGC-CGCg -3'
miRNA:   3'- uaUACGGUCUa--CUGGGUuaCGaGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.