miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28840 5' -52.4 NC_006146.1 + 296 0.68 0.937457
Target:  5'- ----cCCGGGggcgGGCCCGGcgcGCUCGCCa -3'
miRNA:   3'- uauacGGUCUa---CUGGGUUa--CGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 4930 0.67 0.959231
Target:  5'- --cUGUCGGGUGGCC--GUGCUCuguGCCc -3'
miRNA:   3'- uauACGGUCUACUGGguUACGAG---CGG- -5'
28840 5' -52.4 NC_006146.1 + 12040 0.68 0.932353
Target:  5'- -cGUGgCGGGUGcggccaccaGCCCcauGUGCUCGCUu -3'
miRNA:   3'- uaUACgGUCUAC---------UGGGu--UACGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 13272 0.66 0.977661
Target:  5'- -gGUGCCcaa-GACCCAggcgGUGCcCGCCc -3'
miRNA:   3'- uaUACGGucuaCUGGGU----UACGaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 14672 0.66 0.982157
Target:  5'- -aAUGUCAG--GGCCCAGggggGUUCGCg -3'
miRNA:   3'- uaUACGGUCuaCUGGGUUa---CGAGCGg -5'
28840 5' -52.4 NC_006146.1 + 15410 0.74 0.6796
Target:  5'- ---cGCCAGGUGGCCuCAGagggGCUgGCCc -3'
miRNA:   3'- uauaCGGUCUACUGG-GUUa---CGAgCGG- -5'
28840 5' -52.4 NC_006146.1 + 15883 0.66 0.980003
Target:  5'- -cGUGCCGGAgGGCUC---GCUgGCCu -3'
miRNA:   3'- uaUACGGUCUaCUGGGuuaCGAgCGG- -5'
28840 5' -52.4 NC_006146.1 + 17750 0.66 0.982157
Target:  5'- -aAUGUCAG--GGCCCAGggggGUUCGCg -3'
miRNA:   3'- uaUACGGUCuaCUGGGUUa---CGAGCGg -5'
28840 5' -52.4 NC_006146.1 + 20828 0.66 0.982157
Target:  5'- -aAUGUCAG--GGCCCAGggggGUUCGCg -3'
miRNA:   3'- uaUACGGUCuaCUGGGUUa---CGAGCGg -5'
28840 5' -52.4 NC_006146.1 + 23906 0.66 0.982157
Target:  5'- -aAUGUCAG--GGCCCAGggggGUUCGCg -3'
miRNA:   3'- uaUACGGUCuaCUGGGUUa---CGAGCGg -5'
28840 5' -52.4 NC_006146.1 + 26894 0.66 0.975124
Target:  5'- ---cGCCGGGUcGCCCGGcUGCUuacgacgacaCGCCu -3'
miRNA:   3'- uauaCGGUCUAcUGGGUU-ACGA----------GCGG- -5'
28840 5' -52.4 NC_006146.1 + 26983 0.66 0.982157
Target:  5'- -aAUGUCAG--GGCCCAGggggGUUCGCg -3'
miRNA:   3'- uaUACGGUCuaCUGGGUUa---CGAGCGg -5'
28840 5' -52.4 NC_006146.1 + 29608 0.67 0.959231
Target:  5'- ---aGCCAGGcUGAacccgCCAAUGCUC-CCa -3'
miRNA:   3'- uauaCGGUCU-ACUg----GGUUACGAGcGG- -5'
28840 5' -52.4 NC_006146.1 + 30982 0.72 0.808561
Target:  5'- uAUGUGCCAug-GACCCAGga-UCGCCc -3'
miRNA:   3'- -UAUACGGUcuaCUGGGUUacgAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 33108 0.72 0.790058
Target:  5'- ---aGCCGGGUGGCCgCcggcggGUUCGCCg -3'
miRNA:   3'- uauaCGGUCUACUGG-Guua---CGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 33232 0.67 0.966257
Target:  5'- ---aGCCGGGUGGCCgccgGCgggucCGCCg -3'
miRNA:   3'- uauaCGGUCUACUGGguuaCGa----GCGG- -5'
28840 5' -52.4 NC_006146.1 + 33354 0.67 0.969429
Target:  5'- ---aGCCGGGUGGCcgCCGGUGggucCGCCg -3'
miRNA:   3'- uauaCGGUCUACUG--GGUUACga--GCGG- -5'
28840 5' -52.4 NC_006146.1 + 34198 0.66 0.980003
Target:  5'- -gGUGCCAGGcaggGACCUcgcGC-CGCCc -3'
miRNA:   3'- uaUACGGUCUa---CUGGGuuaCGaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 35008 0.75 0.626923
Target:  5'- ---gGUCAGcUGA-CCGAUGCUCGCCa -3'
miRNA:   3'- uauaCGGUCuACUgGGUUACGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 39045 0.66 0.982157
Target:  5'- ---gGCCAGcaggcaggGGCCCugugAAUGgUCGCCg -3'
miRNA:   3'- uauaCGGUCua------CUGGG----UUACgAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.