miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28840 5' -52.4 NC_006146.1 + 41856 0.67 0.969429
Target:  5'- ---cGCCGGcgucugGGCCCAGcucggGCUgCGCCg -3'
miRNA:   3'- uauaCGGUCua----CUGGGUUa----CGA-GCGG- -5'
28840 5' -52.4 NC_006146.1 + 45592 0.75 0.658588
Target:  5'- -cAUGCCAGAUGaaauuuaccacGCCCuucagAGUGCUgGCCu -3'
miRNA:   3'- uaUACGGUCUAC-----------UGGG-----UUACGAgCGG- -5'
28840 5' -52.4 NC_006146.1 + 48662 0.67 0.966257
Target:  5'- ---cGCCuucuGAauccUGGCCC-AUGCUuCGCCg -3'
miRNA:   3'- uauaCGGu---CU----ACUGGGuUACGA-GCGG- -5'
28840 5' -52.4 NC_006146.1 + 51554 0.67 0.966257
Target:  5'- ---cGCCGuacguGAUGACCCuggGCgcCGCCg -3'
miRNA:   3'- uauaCGGU-----CUACUGGGuuaCGa-GCGG- -5'
28840 5' -52.4 NC_006146.1 + 55706 0.66 0.980003
Target:  5'- ---cGCCGGggGGCUC--UGCcCGCCg -3'
miRNA:   3'- uauaCGGUCuaCUGGGuuACGaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 56305 0.71 0.835015
Target:  5'- ---cGCCucgAGGUGGCCCAGgccguaGCUgCGCCg -3'
miRNA:   3'- uauaCGG---UCUACUGGGUUa-----CGA-GCGG- -5'
28840 5' -52.4 NC_006146.1 + 56827 0.66 0.98195
Target:  5'- -gGUGCCGGAUGagauuGCCCGGauagaccUGgaUGCCc -3'
miRNA:   3'- uaUACGGUCUAC-----UGGGUU-------ACgaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 60518 0.68 0.942309
Target:  5'- -gGUGCUcccacugGGCCCAAUuCUCGCCa -3'
miRNA:   3'- uaUACGGucua---CUGGGUUAcGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 62329 0.66 0.984131
Target:  5'- ----cCCGGggGugCCGucaGCUCGCCu -3'
miRNA:   3'- uauacGGUCuaCugGGUua-CGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 62827 0.75 0.637485
Target:  5'- uUGUGCCu-GUGGCCCAG-GCUgGCCa -3'
miRNA:   3'- uAUACGGucUACUGGGUUaCGAgCGG- -5'
28840 5' -52.4 NC_006146.1 + 63120 0.66 0.984131
Target:  5'- --cUGCgCAGGUGcCCCugggaccUGCUgGCCa -3'
miRNA:   3'- uauACG-GUCUACuGGGuu-----ACGAgCGG- -5'
28840 5' -52.4 NC_006146.1 + 64091 0.7 0.896398
Target:  5'- cUAUGCCAGuGUGGCUgAAUuCUCGCg -3'
miRNA:   3'- uAUACGGUC-UACUGGgUUAcGAGCGg -5'
28840 5' -52.4 NC_006146.1 + 64551 1.1 0.00544
Target:  5'- gAUAUGCCAGAUGACCCAAUGCUCGCCc -3'
miRNA:   3'- -UAUACGGUCUACUGGGUUACGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 66948 0.71 0.835015
Target:  5'- -cGUGCCGGGaGACaaaGAgcUGCUCGCCc -3'
miRNA:   3'- uaUACGGUCUaCUGgg-UU--ACGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 72591 0.69 0.909392
Target:  5'- -cGUGCCAGAcGGCCaCGGaGCaCGCCc -3'
miRNA:   3'- uaUACGGUCUaCUGG-GUUaCGaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 74725 0.67 0.968186
Target:  5'- ---gGCCAGAaaggcccuggaggGACCCAGUGa--GCCa -3'
miRNA:   3'- uauaCGGUCUa------------CUGGGUUACgagCGG- -5'
28840 5' -52.4 NC_006146.1 + 75250 0.67 0.956941
Target:  5'- cAUAUGCCAGAucccauggcaggggcUuuuGACCCAAgaccUGCUCcauuGCCu -3'
miRNA:   3'- -UAUACGGUCU---------------A---CUGGGUU----ACGAG----CGG- -5'
28840 5' -52.4 NC_006146.1 + 76910 0.68 0.946909
Target:  5'- ---aGCCAGAggUGACCgCGggGCUgcaGCCg -3'
miRNA:   3'- uauaCGGUCU--ACUGG-GUuaCGAg--CGG- -5'
28840 5' -52.4 NC_006146.1 + 78747 0.68 0.932353
Target:  5'- -aAUGUCAGcguGUGAgCCAG-GCUUGCCc -3'
miRNA:   3'- uaUACGGUC---UACUgGGUUaCGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 85361 0.73 0.721047
Target:  5'- cGUGUGaCCAGAUG-CCCGGUGgagaCGCCa -3'
miRNA:   3'- -UAUAC-GGUCUACuGGGUUACga--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.