Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28840 | 5' | -52.4 | NC_006146.1 | + | 170449 | 0.7 | 0.87508 |
Target: 5'- -cGUGCCGGggGACCCGGggGCgUGUCc -3' miRNA: 3'- uaUACGGUCuaCUGGGUUa-CGaGCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 170054 | 0.67 | 0.962859 |
Target: 5'- -gAUGUCGGGgagGGCCCGggGC-CGCg -3' miRNA: 3'- uaUACGGUCUa--CUGGGUuaCGaGCGg -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 169518 | 0.7 | 0.87508 |
Target: 5'- -cGUGCCGGggGACCCGGggGCgUGUCc -3' miRNA: 3'- uaUACGGUCuaCUGGGUUa-CGaGCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 169122 | 0.67 | 0.962859 |
Target: 5'- -gAUGUCGGGgagGGCCCGggGC-CGCg -3' miRNA: 3'- uaUACGGUCUa--CUGGGUuaCGaGCGg -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 168586 | 0.7 | 0.87508 |
Target: 5'- -cGUGCCGGggGACCCGGggGCgUGUCc -3' miRNA: 3'- uaUACGGUCuaCUGGGUUa-CGaGCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 168190 | 0.67 | 0.962859 |
Target: 5'- -gAUGUCGGGgagGGCCCGggGC-CGCg -3' miRNA: 3'- uaUACGGUCUa--CUGGGUuaCGaGCGg -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 167258 | 0.67 | 0.962859 |
Target: 5'- -gAUGUCGGGgagGGCCCGggGC-CGCg -3' miRNA: 3'- uaUACGGUCUa--CUGGGUuaCGaGCGg -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 157615 | 0.66 | 0.984131 |
Target: 5'- ---cGCCuGGAggcgGACCCGAgggGCUcuggggCGCCg -3' miRNA: 3'- uauaCGG-UCUa---CUGGGUUa--CGA------GCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 155584 | 0.66 | 0.982157 |
Target: 5'- ---cGCCAGggGcACaCCGggGCUgGCCu -3' miRNA: 3'- uauaCGGUCuaC-UG-GGUuaCGAgCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 154537 | 0.66 | 0.984131 |
Target: 5'- ---cGCCuGGAggcgGACCCGAgggGCUcuggggCGCCg -3' miRNA: 3'- uauaCGG-UCUa---CUGGGUUa--CGA------GCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 152800 | 0.68 | 0.942309 |
Target: 5'- ---cGUUGGA-GGCCCGcUGCUCGUCg -3' miRNA: 3'- uauaCGGUCUaCUGGGUuACGAGCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 151459 | 0.66 | 0.984131 |
Target: 5'- ---cGCCuGGAggcgGACCCGAgggGCUcuggggCGCCg -3' miRNA: 3'- uauaCGG-UCUa---CUGGGUUa--CGA------GCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 149409 | 0.66 | 0.984131 |
Target: 5'- gGUAgacgGCCAGGUGAggcauCUgGGUGCUCuuguagGCCg -3' miRNA: 3'- -UAUa---CGGUCUACU-----GGgUUACGAG------CGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 148381 | 0.66 | 0.984131 |
Target: 5'- ---cGCCuGGAggcgGACCCGAgggGCUcuggggCGCCg -3' miRNA: 3'- uauaCGG-UCUa---CUGGGUUa--CGA------GCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 145303 | 0.66 | 0.984131 |
Target: 5'- ---cGCCuGGAggcgGACCCGAgggGCUcuggggCGCCg -3' miRNA: 3'- uauaCGG-UCUa---CUGGGUUa--CGA------GCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 143944 | 0.69 | 0.915513 |
Target: 5'- --cUGCCGGGUaauGCCCGGUcGCUuaCGCCg -3' miRNA: 3'- uauACGGUCUAc--UGGGUUA-CGA--GCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 143244 | 0.69 | 0.926994 |
Target: 5'- -gGUGCCaAGAaaccaggcUGGCCCGGUgacGCUgGCCc -3' miRNA: 3'- uaUACGG-UCU--------ACUGGGUUA---CGAgCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 142225 | 0.66 | 0.984131 |
Target: 5'- ---cGCCuGGAggcgGACCCGAgggGCUcuggggCGCCg -3' miRNA: 3'- uauaCGG-UCUa---CUGGGUUa--CGA------GCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 138838 | 0.75 | 0.626923 |
Target: 5'- ---gGUCAGcUGA-CCGAUGCUCGCCa -3' miRNA: 3'- uauaCGGUCuACUgGGUUACGAGCGG- -5' |
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28840 | 5' | -52.4 | NC_006146.1 | + | 138028 | 0.66 | 0.980003 |
Target: 5'- -gGUGCCAGGcaggGACCUcgcGC-CGCCc -3' miRNA: 3'- uaUACGGUCUa---CUGGGuuaCGaGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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