miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28840 5' -52.4 NC_006146.1 + 101487 0.77 0.533006
Target:  5'- cUGUGCUcGGUGGCCC--UGCUCGUCa -3'
miRNA:   3'- uAUACGGuCUACUGGGuuACGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 110382 0.68 0.95126
Target:  5'- ---gGCgAGAauugGGCCCAGUGggagcaccCUCGCCg -3'
miRNA:   3'- uauaCGgUCUa---CUGGGUUAC--------GAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 128786 0.67 0.955366
Target:  5'- -cGUGCCAGA-GGCCCucguAGUcGUgCGCCg -3'
miRNA:   3'- uaUACGGUCUaCUGGG----UUA-CGaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 149409 0.66 0.984131
Target:  5'- gGUAgacgGCCAGGUGAggcauCUgGGUGCUCuuguagGCCg -3'
miRNA:   3'- -UAUa---CGGUCUACU-----GGgUUACGAG------CGG- -5'
28840 5' -52.4 NC_006146.1 + 33108 0.72 0.790058
Target:  5'- ---aGCCGGGUGGCCgCcggcggGUUCGCCg -3'
miRNA:   3'- uauaCGGUCUACUGG-Guua---CGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 56305 0.71 0.835015
Target:  5'- ---cGCCucgAGGUGGCCCAGgccguaGCUgCGCCg -3'
miRNA:   3'- uauaCGG---UCUACUGGGUUa-----CGA-GCGG- -5'
28840 5' -52.4 NC_006146.1 + 105765 0.7 0.87508
Target:  5'- gGUGUGCCAGGaaGGCCUcuaugugGCUCGCg -3'
miRNA:   3'- -UAUACGGUCUa-CUGGGuua----CGAGCGg -5'
28840 5' -52.4 NC_006146.1 + 168586 0.7 0.87508
Target:  5'- -cGUGCCGGggGACCCGGggGCgUGUCc -3'
miRNA:   3'- uaUACGGUCuaCUGGGUUa-CGaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 64091 0.7 0.896398
Target:  5'- cUAUGCCAGuGUGGCUgAAUuCUCGCg -3'
miRNA:   3'- uAUACGGUC-UACUGGgUUAcGAGCGg -5'
28840 5' -52.4 NC_006146.1 + 152800 0.68 0.942309
Target:  5'- ---cGUUGGA-GGCCCGcUGCUCGUCg -3'
miRNA:   3'- uauaCGGUCUaCUGGGUuACGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 108427 0.69 0.915513
Target:  5'- cGUGgcgGCCAGGUgGACgCAGUGCcCGUCc -3'
miRNA:   3'- -UAUa--CGGUCUA-CUGgGUUACGaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 170449 0.7 0.87508
Target:  5'- -cGUGCCGGggGACCCGGggGCgUGUCc -3'
miRNA:   3'- uaUACGGUCuaCUGGGUUa-CGaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 35008 0.75 0.626923
Target:  5'- ---gGUCAGcUGA-CCGAUGCUCGCCa -3'
miRNA:   3'- uauaCGGUCuACUgGGUUACGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 96325 0.69 0.92138
Target:  5'- --uUGCCGGAgcagUGaccuucgacaGCCCGGUGCagCGCCu -3'
miRNA:   3'- uauACGGUCU----AC----------UGGGUUACGa-GCGG- -5'
28840 5' -52.4 NC_006146.1 + 138838 0.75 0.626923
Target:  5'- ---gGUCAGcUGA-CCGAUGCUCGCCa -3'
miRNA:   3'- uauaCGGUCuACUgGGUUACGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 169518 0.7 0.87508
Target:  5'- -cGUGCCGGggGACCCGGggGCgUGUCc -3'
miRNA:   3'- uaUACGGUCuaCUGGGUUa-CGaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 143244 0.69 0.926994
Target:  5'- -gGUGCCaAGAaaccaggcUGGCCCGGUgacGCUgGCCc -3'
miRNA:   3'- uaUACGG-UCU--------ACUGGGUUA---CGAgCGG- -5'
28840 5' -52.4 NC_006146.1 + 117287 0.68 0.95126
Target:  5'- ---aGUCGGugcacGGCCCGGUGCcgCGCCc -3'
miRNA:   3'- uauaCGGUCua---CUGGGUUACGa-GCGG- -5'
28840 5' -52.4 NC_006146.1 + 62827 0.75 0.637485
Target:  5'- uUGUGCCu-GUGGCCCAG-GCUgGCCa -3'
miRNA:   3'- uAUACGGucUACUGGGUUaCGAgCGG- -5'
28840 5' -52.4 NC_006146.1 + 66948 0.71 0.835015
Target:  5'- -cGUGCCGGGaGACaaaGAgcUGCUCGCCc -3'
miRNA:   3'- uaUACGGUCUaCUGgg-UU--ACGAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.