miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28840 5' -52.4 NC_006146.1 + 115077 0.67 0.959231
Target:  5'- ---gGCCGGGUGcccACCCAGgcGCUgGCUg -3'
miRNA:   3'- uauaCGGUCUAC---UGGGUUa-CGAgCGG- -5'
28840 5' -52.4 NC_006146.1 + 4930 0.67 0.959231
Target:  5'- --cUGUCGGGUGGCC--GUGCUCuguGCCc -3'
miRNA:   3'- uauACGGUCUACUGGguUACGAG---CGG- -5'
28840 5' -52.4 NC_006146.1 + 152800 0.68 0.942309
Target:  5'- ---cGUUGGA-GGCCCGcUGCUCGUCg -3'
miRNA:   3'- uauaCGGUCUaCUGGGUuACGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 108427 0.69 0.915513
Target:  5'- cGUGgcgGCCAGGUgGACgCAGUGCcCGUCc -3'
miRNA:   3'- -UAUa--CGGUCUA-CUGgGUUACGaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 114135 0.66 0.975124
Target:  5'- -cAUGUCGGAUGAggcUCCGgaccaggcgcAUGCUgGCCc -3'
miRNA:   3'- uaUACGGUCUACU---GGGU----------UACGAgCGG- -5'
28840 5' -52.4 NC_006146.1 + 101057 0.67 0.962859
Target:  5'- ---cGCCuGcGUGACCCGcuuCUCGCCg -3'
miRNA:   3'- uauaCGGuC-UACUGGGUuacGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 128786 0.67 0.955366
Target:  5'- -cGUGCCAGA-GGCCCucguAGUcGUgCGCCg -3'
miRNA:   3'- uaUACGGUCUaCUGGG----UUA-CGaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 143944 0.69 0.915513
Target:  5'- --cUGCCGGGUaauGCCCGGUcGCUuaCGCCg -3'
miRNA:   3'- uauACGGUCUAc--UGGGUUA-CGA--GCGG- -5'
28840 5' -52.4 NC_006146.1 + 170054 0.67 0.962859
Target:  5'- -gAUGUCGGGgagGGCCCGggGC-CGCg -3'
miRNA:   3'- uaUACGGUCUa--CUGGGUuaCGaGCGg -5'
28840 5' -52.4 NC_006146.1 + 64091 0.7 0.896398
Target:  5'- cUAUGCCAGuGUGGCUgAAUuCUCGCg -3'
miRNA:   3'- uAUACGGUC-UACUGGgUUAcGAGCGg -5'
28840 5' -52.4 NC_006146.1 + 75250 0.67 0.956941
Target:  5'- cAUAUGCCAGAucccauggcaggggcUuuuGACCCAAgaccUGCUCcauuGCCu -3'
miRNA:   3'- -UAUACGGUCU---------------A---CUGGGUU----ACGAG----CGG- -5'
28840 5' -52.4 NC_006146.1 + 167258 0.67 0.962859
Target:  5'- -gAUGUCGGGgagGGCCCGggGC-CGCg -3'
miRNA:   3'- uaUACGGUCUa--CUGGGUuaCGaGCGg -5'
28840 5' -52.4 NC_006146.1 + 117287 0.68 0.95126
Target:  5'- ---aGUCGGugcacGGCCCGGUGCcgCGCCc -3'
miRNA:   3'- uauaCGGUCua---CUGGGUUACGa-GCGG- -5'
28840 5' -52.4 NC_006146.1 + 110382 0.68 0.95126
Target:  5'- ---gGCgAGAauugGGCCCAGUGggagcaccCUCGCCg -3'
miRNA:   3'- uauaCGgUCUa---CUGGGUUAC--------GAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 143244 0.69 0.926994
Target:  5'- -gGUGCCaAGAaaccaggcUGGCCCGGUgacGCUgGCCc -3'
miRNA:   3'- uaUACGG-UCU--------ACUGGGUUA---CGAgCGG- -5'
28840 5' -52.4 NC_006146.1 + 96325 0.69 0.92138
Target:  5'- --uUGCCGGAgcagUGaccuucgacaGCCCGGUGCagCGCCu -3'
miRNA:   3'- uauACGGUCU----AC----------UGGGUUACGa-GCGG- -5'
28840 5' -52.4 NC_006146.1 + 138028 0.66 0.980003
Target:  5'- -gGUGCCAGGcaggGACCUcgcGC-CGCCc -3'
miRNA:   3'- uaUACGGUCUa---CUGGGuuaCGaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 111143 0.66 0.975124
Target:  5'- ----cCCAGGUGGCCgGGcgGCUgGCCu -3'
miRNA:   3'- uauacGGUCUACUGGgUUa-CGAgCGG- -5'
28840 5' -52.4 NC_006146.1 + 74725 0.67 0.968186
Target:  5'- ---gGCCAGAaaggcccuggaggGACCCAGUGa--GCCa -3'
miRNA:   3'- uauaCGGUCUa------------CUGGGUUACgagCGG- -5'
28840 5' -52.4 NC_006146.1 + 33232 0.67 0.966257
Target:  5'- ---aGCCGGGUGGCCgccgGCgggucCGCCg -3'
miRNA:   3'- uauaCGGUCUACUGGguuaCGa----GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.