miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28840 5' -52.4 NC_006146.1 + 114687 0.68 0.937457
Target:  5'- ---cGCUGGAcGGCUCGcgGCUCGUCc -3'
miRNA:   3'- uauaCGGUCUaCUGGGUuaCGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 26894 0.66 0.975124
Target:  5'- ---cGCCGGGUcGCCCGGcUGCUuacgacgacaCGCCu -3'
miRNA:   3'- uauaCGGUCUAcUGGGUU-ACGA----------GCGG- -5'
28840 5' -52.4 NC_006146.1 + 102335 0.66 0.975124
Target:  5'- ---gGcCCAGAUcGAUCUcg-GCUCGCCa -3'
miRNA:   3'- uauaC-GGUCUA-CUGGGuuaCGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 41856 0.67 0.969429
Target:  5'- ---cGCCGGcgucugGGCCCAGcucggGCUgCGCCg -3'
miRNA:   3'- uauaCGGUCua----CUGGGUUa----CGA-GCGG- -5'
28840 5' -52.4 NC_006146.1 + 51554 0.67 0.966257
Target:  5'- ---cGCCGuacguGAUGACCCuggGCgcCGCCg -3'
miRNA:   3'- uauaCGGU-----CUACUGGGuuaCGa-GCGG- -5'
28840 5' -52.4 NC_006146.1 + 29608 0.67 0.959231
Target:  5'- ---aGCCAGGcUGAacccgCCAAUGCUC-CCa -3'
miRNA:   3'- uauaCGGUCU-ACUg----GGUUACGAGcGG- -5'
28840 5' -52.4 NC_006146.1 + 76910 0.68 0.946909
Target:  5'- ---aGCCAGAggUGACCgCGggGCUgcaGCCg -3'
miRNA:   3'- uauaCGGUCU--ACUGG-GUuaCGAg--CGG- -5'
28840 5' -52.4 NC_006146.1 + 60518 0.68 0.942309
Target:  5'- -gGUGCUcccacugGGCCCAAUuCUCGCCa -3'
miRNA:   3'- uaUACGGucua---CUGGGUUAcGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 296 0.68 0.937457
Target:  5'- ----cCCGGGggcgGGCCCGGcgcGCUCGCCa -3'
miRNA:   3'- uauacGGUCUa---CUGGGUUa--CGAGCGG- -5'
28840 5' -52.4 NC_006146.1 + 13272 0.66 0.977661
Target:  5'- -gGUGCCcaa-GACCCAggcgGUGCcCGCCc -3'
miRNA:   3'- uaUACGGucuaCUGGGU----UACGaGCGG- -5'
28840 5' -52.4 NC_006146.1 + 110288 0.66 0.980003
Target:  5'- --cUGCCAuGAUGGCCUcg-GCguaggcguucaUCGCCg -3'
miRNA:   3'- uauACGGU-CUACUGGGuuaCG-----------AGCGG- -5'
28840 5' -52.4 NC_006146.1 + 15883 0.66 0.980003
Target:  5'- -cGUGCCGGAgGGCUC---GCUgGCCu -3'
miRNA:   3'- uaUACGGUCUaCUGGGuuaCGAgCGG- -5'
28840 5' -52.4 NC_006146.1 + 157615 0.66 0.984131
Target:  5'- ---cGCCuGGAggcgGACCCGAgggGCUcuggggCGCCg -3'
miRNA:   3'- uauaCGG-UCUa---CUGGGUUa--CGA------GCGG- -5'
28840 5' -52.4 NC_006146.1 + 154537 0.66 0.984131
Target:  5'- ---cGCCuGGAggcgGACCCGAgggGCUcuggggCGCCg -3'
miRNA:   3'- uauaCGG-UCUa---CUGGGUUa--CGA------GCGG- -5'
28840 5' -52.4 NC_006146.1 + 151459 0.66 0.984131
Target:  5'- ---cGCCuGGAggcgGACCCGAgggGCUcuggggCGCCg -3'
miRNA:   3'- uauaCGG-UCUa---CUGGGUUa--CGA------GCGG- -5'
28840 5' -52.4 NC_006146.1 + 148381 0.66 0.984131
Target:  5'- ---cGCCuGGAggcgGACCCGAgggGCUcuggggCGCCg -3'
miRNA:   3'- uauaCGG-UCUa---CUGGGUUa--CGA------GCGG- -5'
28840 5' -52.4 NC_006146.1 + 145303 0.66 0.984131
Target:  5'- ---cGCCuGGAggcgGACCCGAgggGCUcuggggCGCCg -3'
miRNA:   3'- uauaCGG-UCUa---CUGGGUUa--CGA------GCGG- -5'
28840 5' -52.4 NC_006146.1 + 142225 0.66 0.984131
Target:  5'- ---cGCCuGGAggcgGACCCGAgggGCUcuggggCGCCg -3'
miRNA:   3'- uauaCGG-UCUa---CUGGGUUa--CGA------GCGG- -5'
28840 5' -52.4 NC_006146.1 + 124782 0.66 0.983942
Target:  5'- ---gGCCAG--GGCCCGGgcaugccugcugcUGCUCGCg -3'
miRNA:   3'- uauaCGGUCuaCUGGGUU-------------ACGAGCGg -5'
28840 5' -52.4 NC_006146.1 + 56827 0.66 0.98195
Target:  5'- -gGUGCCGGAUGagauuGCCCGGauagaccUGgaUGCCc -3'
miRNA:   3'- uaUACGGUCUAC-----UGGGUU-------ACgaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.