Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28841 | 3' | -59.8 | NC_006146.1 | + | 121325 | 0.66 | 0.754922 |
Target: 5'- ----aCAGCCCcaccCUGgccucagcgCUGGGCCUCAg -3' miRNA: 3'- gucagGUCGGGa---GACa--------GACCCGGAGU- -5' |
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28841 | 3' | -59.8 | NC_006146.1 | + | 90888 | 0.66 | 0.754922 |
Target: 5'- gAGcCUGGCCCUCaacCUGGGCC-CAu -3' miRNA: 3'- gUCaGGUCGGGAGacaGACCCGGaGU- -5' |
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28841 | 3' | -59.8 | NC_006146.1 | + | 20451 | 0.66 | 0.745488 |
Target: 5'- --aUCCAGCCC-CUGUCc-GGCUUCu -3' miRNA: 3'- gucAGGUCGGGaGACAGacCCGGAGu -5' |
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28841 | 3' | -59.8 | NC_006146.1 | + | 103155 | 0.66 | 0.726344 |
Target: 5'- aGGUCUuuGGCuCCUCcGUCUGGGCg--- -3' miRNA: 3'- gUCAGG--UCG-GGAGaCAGACCCGgagu -5' |
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28841 | 3' | -59.8 | NC_006146.1 | + | 12338 | 0.67 | 0.687192 |
Target: 5'- uCAGUCCccucGCCC-----CUGGGCCUCAg -3' miRNA: 3'- -GUCAGGu---CGGGagacaGACCCGGAGU- -5' |
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28841 | 3' | -59.8 | NC_006146.1 | + | 15417 | 0.67 | 0.687192 |
Target: 5'- uCAGUCCccucGCCC-----CUGGGCCUCAg -3' miRNA: 3'- -GUCAGGu---CGGGagacaGACCCGGAGU- -5' |
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28841 | 3' | -59.8 | NC_006146.1 | + | 18495 | 0.67 | 0.687192 |
Target: 5'- uCAGUCCccucGCCC-----CUGGGCCUCAg -3' miRNA: 3'- -GUCAGGu---CGGGagacaGACCCGGAGU- -5' |
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28841 | 3' | -59.8 | NC_006146.1 | + | 21573 | 0.67 | 0.687192 |
Target: 5'- uCAGUCCccucGCCC-----CUGGGCCUCAg -3' miRNA: 3'- -GUCAGGu---CGGGagacaGACCCGGAGU- -5' |
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28841 | 3' | -59.8 | NC_006146.1 | + | 24651 | 0.67 | 0.687192 |
Target: 5'- uCAGUCCccucGCCC-----CUGGGCCUCAg -3' miRNA: 3'- -GUCAGGu---CGGGagacaGACCCGGAGU- -5' |
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28841 | 3' | -59.8 | NC_006146.1 | + | 27729 | 0.67 | 0.687192 |
Target: 5'- uCAGUCCccucGCCC-----CUGGGCCUCAg -3' miRNA: 3'- -GUCAGGu---CGGGagacaGACCCGGAGU- -5' |
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28841 | 3' | -59.8 | NC_006146.1 | + | 154247 | 0.67 | 0.687192 |
Target: 5'- uUAG-CCAGgCCgCUGg-UGGGCCUCAg -3' miRNA: 3'- -GUCaGGUCgGGaGACagACCCGGAGU- -5' |
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28841 | 3' | -59.8 | NC_006146.1 | + | 159999 | 0.67 | 0.66732 |
Target: 5'- gGGUCUGGCCUcCUGUggaGGGCCUUg -3' miRNA: 3'- gUCAGGUCGGGaGACAga-CCCGGAGu -5' |
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28841 | 3' | -59.8 | NC_006146.1 | + | 125930 | 0.68 | 0.617298 |
Target: 5'- gGGUCCGGCCaccgCgGUCgagucccccgGGGCCUCc -3' miRNA: 3'- gUCAGGUCGGga--GaCAGa---------CCCGGAGu -5' |
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28841 | 3' | -59.8 | NC_006146.1 | + | 94618 | 0.69 | 0.557686 |
Target: 5'- -cGUCCAGCCCac-GUaCUGGGCCg-- -3' miRNA: 3'- guCAGGUCGGGagaCA-GACCCGGagu -5' |
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28841 | 3' | -59.8 | NC_006146.1 | + | 52994 | 0.72 | 0.393286 |
Target: 5'- -cGUCUcgaGGCCCcucuUCUGgccCUGGGCCUCAc -3' miRNA: 3'- guCAGG---UCGGG----AGACa--GACCCGGAGU- -5' |
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28841 | 3' | -59.8 | NC_006146.1 | + | 109171 | 0.73 | 0.338329 |
Target: 5'- uCGGUcCCGGCCCUUaGUCUGaGGCC-CAg -3' miRNA: 3'- -GUCA-GGUCGGGAGaCAGAC-CCGGaGU- -5' |
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28841 | 3' | -59.8 | NC_006146.1 | + | 83118 | 0.74 | 0.330948 |
Target: 5'- ---cCCAGCCCUgUGUCUGGGacccCCUCu -3' miRNA: 3'- gucaGGUCGGGAgACAGACCC----GGAGu -5' |
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28841 | 3' | -59.8 | NC_006146.1 | + | 61711 | 1.08 | 0.001513 |
Target: 5'- cCAGUCCAGCCCUCUGUCUGGGCCUCAg -3' miRNA: 3'- -GUCAGGUCGGGAGACAGACCCGGAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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